View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18408_high_14 (Length: 238)
Name: NF18408_high_14
Description: NF18408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18408_high_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 13203660 - 13203435
Alignment:
| Q |
1 |
ctcaaattattagtgctatcgacgtatcagtgtctgtatcgtgtccggtattcgtatccgtgcttcatagtacagaaccatctcaagctttaaaactaat |
100 |
Q |
| |
|
||||||||||||||| | | ||||||||||||| ||| ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13203660 |
ctcaaattattagtgttgttgacgtatcagtgtttgtgtcgtgtcgggtatccgtatccgtgcttcataggacagaaccatctcaagctttaaaactaat |
13203561 |
T |
|
| Q |
101 |
ataactcaannnnnnnnn---aattatatatgatatttcaatctctgaccattcactttttagatttaatttggatgagcatacaaggtcggccactcga |
197 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13203560 |
ataactcaattttttttttttaattatatatgatatttcaatctctgatcattcactttttagatttaatttggatgagcatacaaggtcggccactcga |
13203461 |
T |
|
| Q |
198 |
ccttagggtaaggctattaaagttct |
223 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
13203460 |
cctttgggtaaggctattaaagttct |
13203435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 27945060 - 27944991
Alignment:
| Q |
1 |
ctcaaattattagtgctatcgacgtatcagtgtctgtatcgtgtccggtattcgtatccgtgcttcatag |
70 |
Q |
| |
|
||||||||||||||| | ||| ||| |||||||| || ||||||||||| | |||||||||||||||||| |
|
|
| T |
27945060 |
ctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag |
27944991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 7328731 - 7328802
Alignment:
| Q |
1 |
ctcaaattattagtgctatcgacgtatcagtgtctgtatcgtgtccggtattcgtatccgtgcttcatagta |
72 |
Q |
| |
|
||||||||||||| ||||||||| | | ||||||| |||||| |||| | |||||||||||||||||||| |
|
|
| T |
7328731 |
ctcaaattattagcagtatcgacgtgttaatgtctgtgtcgtgttcggtgtccgtatccgtgcttcatagta |
7328802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 19820434 - 19820503
Alignment:
| Q |
1 |
ctcaaattattagtgctatcgacgtatcagtgtctgtatcgtgtccggtattcgtatccgtgcttcatag |
70 |
Q |
| |
|
||||||||||||| | | ||| || |||||||| || ||||||||||| | |||||||||||||||||| |
|
|
| T |
19820434 |
ctcaaattattagcggtgtcggagtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag |
19820503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 8365560 - 8365628
Alignment:
| Q |
2 |
tcaaattattagtgctatcgacgtatcagtgtctgtatcgtgtccggtattcgtatccgtgcttcatag |
70 |
Q |
| |
|
||||||||||||| | ||| ||| |||||||| || ||||||| ||| | |||||||||||||||||| |
|
|
| T |
8365560 |
tcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtctggtgtccgtatccgtgcttcatag |
8365628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 55401093 - 55401025
Alignment:
| Q |
2 |
tcaaattattagtgctatcgacgtatcagtgtctgtatcgtgtccggtattcgtatccgtgcttcatag |
70 |
Q |
| |
|
||||||||||||| | ||| |||||||||||| || |||| |||||| | |||||| ||||||||||| |
|
|
| T |
55401093 |
tcaaattattagttgtgtcggcgtatcagtgtccgtgtcgtatccggtgtccgtatctgtgcttcatag |
55401025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18276540 - 18276492
Alignment:
| Q |
1 |
ctcaaattattagtgctatcgacgtatcagtgtctgtatcgtgtccggt |
49 |
Q |
| |
|
||||||||||||| | | ||| | ||||||||||||||||||||||||| |
|
|
| T |
18276540 |
ctcaaattattagcggtgtcggcatatcagtgtctgtatcgtgtccggt |
18276492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 20539715 - 20539783
Alignment:
| Q |
2 |
tcaaattattagtgctatcgacgtatcagtgtctgtatcgtgtccggtattcgtatccgtgcttcatag |
70 |
Q |
| |
|
|||||||||||| | ||||||| |||||||| || |||||||| || | |||||||||||||||||| |
|
|
| T |
20539715 |
tcaaattattagctgtgtcgacgtgtcagtgtccgtgtcgtgtccagtgtccgtatccgtgcttcatag |
20539783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University