View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18408_high_4 (Length: 409)
Name: NF18408_high_4
Description: NF18408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18408_high_4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 16 - 409
Target Start/End: Original strand, 4174534 - 4174927
Alignment:
| Q |
16 |
agaatccattatgtttagtagctctggaggccagttttctactagatccttagcttgcttctttagcaccgatggctcggttgttttaggacctaccatt |
115 |
Q |
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| T |
4174534 |
agaatccattatgtttagtagctctggaagccagttttctacaagatccttagcttgcttctttagcaccgatggctcggttgttttaggacctaccatt |
4174633 |
T |
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| Q |
116 |
gaactcaactatttttcatttgaacaataaactaagtaatttaactgtatatgcatgtagttagaagtaagaacctggagatgaactattgaaggtgaca |
215 |
Q |
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| T |
4174634 |
gaactcaactatttttcatttgaacaataaactaagtaatttaactgtatatgcatgtagttagaagtaagaacctggagatgaactattgaaggtgaca |
4174733 |
T |
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| Q |
216 |
aaccaatacactttggtaggagaaacaggaacatatgctgcacgtaacccttttccaaagatgtaattcacccgtggctcaaaaggttgtccatctgaat |
315 |
Q |
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| T |
4174734 |
aaccaatacactttggtaggagaaacaggaacatatcctgcacgtaacccttttccatagatgtaattcacccgtagctcaaaaggttgtccatctgaat |
4174833 |
T |
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| Q |
316 |
aggaggcaagtccacggaaagcacaataaccaacgtactttggctcagaaaatcccatccacttagctatcggggatcgaatgccgtcgcaccc |
409 |
Q |
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| T |
4174834 |
aggaggcaagtccacggaaagcacaataaccaacgtaatttggctcagaaaatcccatccacttagctatcggggatcgaatgccgtcgcaccc |
4174927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 409
Target Start/End: Original strand, 4170536 - 4170932
Alignment:
| Q |
16 |
agaatccattatgtttagtagctctggaggccagttttctactagatccttagcttgcttctttagcaccgatggctcggttgttttaggacctaccatt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
4170536 |
agaatccattatgtttagtagctctggaggccagttttccactagatccttagcttgcttctttagcaccgatggctcagttgttttaggacctgccatt |
4170635 |
T |
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| Q |
116 |
gaactcaactatttttcatttgaacaataaactaagtaatttaactgtatatgcatgta---gttagaagtaagaacctggagatgaactattgaaggtg |
212 |
Q |
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| T |
4170636 |
gaactcaactatttttcatttgaacaataaactcagtaatttaatcatacatggacttattagtaacaagtaacaacctggagatgaactgttgaagcag |
4170735 |
T |
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| Q |
213 |
acaaaccaatacactttggtaggagaaacaggaacatatgctgcacgtaacccttttccaaagatgtaattcacccgtggctcaaaaggttgtccatctg |
312 |
Q |
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| ||||||||| |||||||| |||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| | |||||||||||| |||| |
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| T |
4170736 |
ataaaccaatagactttggttggagaaacaggaacatatcctgcgcgtaacccttttccatagatgtaattcacccgtggttgaaaaggttgtccgtctg |
4170835 |
T |
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| Q |
313 |
aataggaggcaagtccacggaaagcacaataaccaacgtactttggctcagaaaatcccatccacttagctatcggggatcgaatgccgtcgcaccc |
409 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
4170836 |
aataggaggcaagtccacggaaagcacaatgaccaacgaactttggctcagaaaatcccatccacttagctatcggtgatcgaattccgtcgcaccc |
4170932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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