View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18408_high_5 (Length: 406)

Name: NF18408_high_5
Description: NF18408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18408_high_5
NF18408_high_5
[»] chr6 (5 HSPs)
chr6 (1-391)||(887887-888278)
chr6 (132-291)||(1002916-1003069)
chr6 (64-112)||(32847516-32847564)
chr6 (78-124)||(4433089-4433135)
chr6 (1-29)||(1187238-1187266)
[»] scaffold0117 (1 HSPs)
scaffold0117 (308-391)||(16531-16616)
[»] chr4 (3 HSPs)
chr4 (317-391)||(48301318-48301392)
chr4 (70-124)||(5912673-5912727)
chr4 (70-100)||(10411764-10411794)
[»] chr8 (3 HSPs)
chr8 (70-124)||(30051677-30051731)
chr8 (63-112)||(11443398-11443447)
chr8 (64-112)||(25016718-25016766)
[»] chr3 (1 HSPs)
chr3 (72-114)||(52750236-52750278)
[»] chr5 (1 HSPs)
chr5 (69-109)||(29161162-29161202)


Alignment Details
Target: chr6 (Bit Score: 376; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 887887 - 888278
Alignment:
Q  1 taaaacaaacattctcatcaatcttcatatttaaacagtacagacaaaagtaatataacaatcataaactgatatatcatatgtgaacctcaaaataatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  887887 taaaacaaacattctcatcaatcttcatatttaaacagtacagacaaaggtaatataacaatcataaactgatatatcatatgtgaacctcaaaataatt 887986  T
Q  101 aaagattcaagttattaatcaaattactaaataaagaaaagtgactaacttcactaaatcttggaaatgaatcatcaaaaggaatcaagattcaaaatga 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  887987 aaagattcaagttataaatcaaattactaaataaagaaaagtgactaacttcactaaatcttggaaatgaatcatcaaaaggaatcaagattcaaaatga 888086  T
Q  201 gactcgtatccaaaataacataaccatttgatttacaatgtgtgcatcgattttggatatcgaatcaagatatgacacgcatatattgtgagaagatact 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  888087 gactcgtatccaaaataacataaccatttgatttacaatgtgtgcatcgattttggatatcgaatcaagatatgacacgcatatattgtgagaagatact 888186  T
Q  301 -caaatttatgttacgactatcttaactaattttctctgtgcattctgcttatagttatagctaataagctctaatttctgttgatttttct 391  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  888187 ccaaatttatgttacgactatcttaactaattttctctgtgcattctgcttatagttatagctaataagctctaatttctgttgatttttct 888278  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 132 - 291
Target Start/End: Complemental strand, 1003069 - 1002916
Alignment:
Q  132 taaagaaaagtgactaacttcactaaatcttggaaatgaatcatcaaaaggaatcaagattcaaaatgagactcgtatccaaaataacataaccatttga 231  Q
    |||||||||| |||||||| |||||||| | |||||||| |||| |||||||||||||||||||||||| | || ||||    |||||| |||||||| |    
T  1003069 taaagaaaagcgactaactacactaaatttaggaaatgattcattaaaaggaatcaagattcaaaatgatattcatatc----ataacaaaaccatttca 1002974  T
Q  232 tttacaatgtgtgcatcgattttggatatcgaatcaagatatgacacgcatatattgtga 291  Q
    |||| |||||||  |||||||||| ||||||||||||| || ||| | ||||||| ||||    
T  1002973 tttaaaatgtgt--atcgattttgaatatcgaatcaagttacgactcacatatatcgtga 1002916  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 32847516 - 32847564
Alignment:
Q  64 ataaactgatatatcatatgtgaacctcaaaataattaaagattcaagt 112  Q
    |||| |||||||||||||| ||| ||||||||||||| |||||||||||    
T  32847516 ataagctgatatatcatatatgagcctcaaaataattcaagattcaagt 32847564  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 4433089 - 4433135
Alignment:
Q  78 catatgtgaacctcaaaataattaaagattcaagttattaatcaaat 124  Q
    ||||| ||||||||||||||||| ||||||||||| || ||||||||    
T  4433089 catatatgaacctcaaaataattcaagattcaagtcataaatcaaat 4433135  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 1187266 - 1187238
Alignment:
Q  1 taaaacaaacattctcatcaatcttcata 29  Q
    |||||||||||||||||||||||||||||    
T  1187266 taaaacaaacattctcatcaatcttcata 1187238  T

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Target: scaffold0117 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 308 - 391
Target Start/End: Complemental strand, 16616 - 16531
Alignment:
Q  308 atgttacgactatcttaactaattttctct--gtgcattctgcttatagttatagctaataagctctaatttctgttgatttttct 391  Q
    |||||| ||||||||||| ||| |||||||  ||||||||||||||||||||||||||||||| |||  ||| |||||||||||||    
T  16616 atgttatgactatcttaagtaactttctctatgtgcattctgcttatagttatagctaataagttctgttttgtgttgatttttct 16531  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 317 - 391
Target Start/End: Complemental strand, 48301392 - 48301318
Alignment:
Q  317 ctatcttaactaattttctctgtgcattctgcttatagttatagctaataagctctaatttctgttgatttttct 391  Q
    |||||||||||||||||||||| ||| |||||||||||| |||||||||| |||||| ||| | || ||||||||    
T  48301392 ctatcttaactaattttctctgcgcagtctgcttatagtcatagctaatatgctctattttatttttatttttct 48301318  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 5912727 - 5912673
Alignment:
Q  70 tgatatatcatatgtgaacctcaaaataattaaagattcaagttattaatcaaat 124  Q
    |||||||| |||| ||||||||||||||||| ||||||||| ||||  |||||||    
T  5912727 tgatatattatatatgaacctcaaaataattcaagattcaaattatatatcaaat 5912673  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 100
Target Start/End: Complemental strand, 10411794 - 10411764
Alignment:
Q  70 tgatatatcatatgtgaacctcaaaataatt 100  Q
    |||||||||||||||||||||||||||||||    
T  10411794 tgatatatcatatgtgaacctcaaaataatt 10411764  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 30051731 - 30051677
Alignment:
Q  70 tgatatatcatatgtgaacctcaaaataattaaagattcaagttattaatcaaat 124  Q
    ||||||||||||| |||| |||||||||||| ||||||||||||||  |||||||    
T  30051731 tgatatatcatatatgaatctcaaaataattcaagattcaagttatatatcaaat 30051677  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 11443447 - 11443398
Alignment:
Q  63 cataaactgatatatcatatgtgaacctcaaaataattaaagattcaagt 112  Q
    ||||| |||||||||||||| ||||| ||||||||||| |||||||||||    
T  11443447 cataagctgatatatcatatatgaacttcaaaataattcaagattcaagt 11443398  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 25016766 - 25016718
Alignment:
Q  64 ataaactgatatatcatatgtgaacctcaaaataattaaagattcaagt 112  Q
    |||| |||||||||||||||| ||||||| |||||||||| ||||||||    
T  25016766 ataagctgatatatcatatgtaaacctcacaataattaaacattcaagt 25016718  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 52750278 - 52750236
Alignment:
Q  72 atatatcatatgtgaacctcaaaataattaaagattcaagtta 114  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||    
T  52750278 atatatcatatatgaacctcaaactaattcaagattcaagtta 52750236  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 29161202 - 29161162
Alignment:
Q  69 ctgatatatcatatgtgaacctcaaaataattaaagattca 109  Q
    |||||||||||||| ||||||||||||||||| ||| ||||    
T  29161202 ctgatatatcatatatgaacctcaaaataattcaaggttca 29161162  T

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