View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18408_high_7 (Length: 327)
Name: NF18408_high_7
Description: NF18408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18408_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 25153375 - 25153059
Alignment:
| Q |
1 |
atacgtgctaaataattagctataaaattataataaaaatttatgtttcttacatcaaattgagaaaagatatgactaaaattctcaagcttgtttacat |
100 |
Q |
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| T |
25153375 |
atacgtggtaaataattagctataaaattataataaaaatctatgtttgttacatcaaattgagaaaagatatgactaaaattctcaagcttgtttacat |
25153276 |
T |
|
| Q |
101 |
tatgatcttctttgttttcttattttttcttgttagggttgtaaactctggtattccctttctctattttaatttctaaaagtttatgcactactttatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||| |
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| T |
25153275 |
tatgatcttctttgttttcttattttttcttgttagggttgtaaactctggtattccctttctctattttaatttctcaaagtttttgccctactttatt |
25153176 |
T |
|
| Q |
201 |
cacaaccttttatacattttaattaacactccttacttcttgttatacattacagattatccttatccttgttttatcgacaagaaaacttgtcaactaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
25153175 |
cacaaccttttatacattttaattaacactccttacttcttgttatacattacagattatccttatccttgttttgttgacaagaaaacttgtcaactaa |
25153076 |
T |
|
| Q |
301 |
attgtcctaaacctttg |
317 |
Q |
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||||||||||||||||| |
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| T |
25153075 |
attgtcctaaacctttg |
25153059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 40 - 258
Target Start/End: Complemental strand, 25148076 - 25147859
Alignment:
| Q |
40 |
tttatgtttcttacatcaaattgagaaaagatatgactaaaattctcaagcttgtttacattatgatcttctttgttttcttattttttcttgttagggt |
139 |
Q |
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| T |
25148076 |
tttatgttttttacatcaaaaggagaaaagatatgactaaaatgctcaagcttgtttactttatgatcttgtttgttttcatattttttcttgttagggt |
25147977 |
T |
|
| Q |
140 |
tgtaaactctggtattccctttctctattttaatttctaaaagtttatgcactactttattcacaaccttttatacattttaattaacactccttacttc |
239 |
Q |
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| T |
25147976 |
tgtaaactctggtaatgtctttctctattttaatttctcagagtttttgcactactttatgcacaactttttattcattttca-taacactctttacttc |
25147878 |
T |
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| Q |
240 |
ttgttatacattacagatt |
258 |
Q |
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|||||||||| ||||||| |
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| T |
25147877 |
ttgttatacaacacagatt |
25147859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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