View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18408_high_8 (Length: 289)
Name: NF18408_high_8
Description: NF18408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18408_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 44146992 - 44146751
Alignment:
| Q |
19 |
acctttgactgcacatctctgatctcagatctcatattggcagatggaagtcaaactgatatttagctctattttttgtataaacttggaattcttattg |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44146992 |
acctttgactgcgcatctctgatctcagatctcatattggcagatggaagtcaaactgatatttagctctattttttgtataaacttggaattcttattg |
44146893 |
T |
|
| Q |
119 |
acctgtttggatatcaaaagatataatataggaaggccacttccttctcaattccgagttaataatacaatctaatggattatggatgataagcannnnn |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44146892 |
acctgtttggatatcaaaagatataatataggaaggccacttccttctcaattccgagttaat-atacaatctaatggattatggatgataagcattttt |
44146794 |
T |
|
| Q |
219 |
nncaacgtgtttagaacaccataatgacttctttattttttat |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44146793 |
ttcaacgtgtttagaacaccataatgacttctttatttcttat |
44146751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 40896551 - 40896307
Alignment:
| Q |
19 |
acctttgactgcacatctctgatctcagatctcatattggcagatggaagtcaaactgatatttagctctattttttgtataaacttggaattcttattg |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40896551 |
acctttgactgcgcatctctgatctcagatctcatattggcagatggaagtcaaactgatatttagctctattttttgtataaacttggaattctttttg |
40896452 |
T |
|
| Q |
119 |
acctgtttggatatcaaaagatataatataggaaggccacttccttctcaattccgagttaataatacaatctaatggattatggatg--ataagcannn |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40896451 |
acctgtttggatatcaaaagatataatataggaaggccacttccttctcaattccgagttaataatacaatctaatggattatggatgatataagcattt |
40896352 |
T |
|
| Q |
217 |
nnnncaacgtgtttagaacaccataatgacttctttattttttat |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
40896351 |
ttttcaacgtgtttagaacaccataatgacttctctatttattat |
40896307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University