View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18408_low_10 (Length: 286)
Name: NF18408_low_10
Description: NF18408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18408_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 32844846 - 32844591
Alignment:
| Q |
19 |
gaacgagggaacctgaggtcgtgcgttgcaaggcccaagtgtggaaaaggccagcaaaacaatacttgcaaacatacacgacgctgaaagccacaaagca |
118 |
Q |
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| T |
32844846 |
gaacgagggaacctgaggtcgtgcgttgcaaggcccaagtgtggaaaaagccagcaaaacaatacttgcaaacatacacaacgctgaaagccacaaagca |
32844747 |
T |
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| Q |
119 |
taagatgaggacggtgagggtgaaggctactagagccggtggggtcttgtatgttggggccggtggggtgtcgtacttaggctccgatgaagacattggc |
218 |
Q |
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| T |
32844746 |
taagatgaggacggtgagggtgaaggctactagagccggtggggtcttgtatgttggggccggtggggtgtcgtacttaggctccgatgaagacattggc |
32844647 |
T |
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| Q |
219 |
gggatgagaaactatcaacaatggaatattattggttttcaaggtgaccggagaat |
274 |
Q |
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| T |
32844646 |
gggatgagaaactatcaacaatggaatattattggttttcaaggtgaccggagaat |
32844591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 27745166 - 27744924
Alignment:
| Q |
19 |
gaacgagggaacctgaggtcgtgcgttgcaaggcccaagtgtggaaaaggccagcaaaacaatacttgcaaacatacacgacgctgaaagccacaaagca |
118 |
Q |
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|||||||||| ||||||| |||||| ||||||||||| | ||||||| ||| ||||| ||||||||||||| |||||| | |||||||||||||||||| |
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| T |
27745166 |
gaacgagggatcctgaggccgtgcgatgcaaggcccacatatggaaaatgcctgcaaagcaatacttgcaaagatacacaatgctgaaagccacaaagca |
27745067 |
T |
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| Q |
119 |
taagatgaggacggtgagggtgaaggctactagagccggtggggtcttgtatgttggggccggtggggtgtcgtacttaggctccgatgaagacattggc |
218 |
Q |
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| T |
27745066 |
taggatgaggacggtgagggtgaaggctactagtgccggtggggtcttatgtgctggagccggtggggggtcgtacttagattctgataaagacattgtc |
27744967 |
T |
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| Q |
219 |
gggatgagaaactatcaacaatggaatattattggttttcaag |
261 |
Q |
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| T |
27744966 |
gaattgagaaactatcaacaatggactgttattggttttcaag |
27744924 |
T |
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