View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18408_low_12 (Length: 264)
Name: NF18408_low_12
Description: NF18408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18408_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 3 - 138
Target Start/End: Original strand, 40743914 - 40744049
Alignment:
| Q |
3 |
gttggacaattcatttcactcattcaaactaagacatcaaatgaattgacttgatgatgaatagatatttccttaacctttctcctaatgtattatttga |
102 |
Q |
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| T |
40743914 |
gttggacaattcatttcactcattcaaactaagacatcaaatgaattgacttgatgattcatacatatttccttaacctttctcctaatgtattatttga |
40744013 |
T |
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| Q |
103 |
agaatataatgattttcaatttccatatcctataaa |
138 |
Q |
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| T |
40744014 |
agaatataatgattttcaatttccatatcctataaa |
40744049 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 5723169 - 5723202
Alignment:
| Q |
215 |
tggggtggcacttcagtgccattgaaaaactaat |
248 |
Q |
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| T |
5723169 |
tggggtggcacttcagtgccattgaaaaactaat |
5723202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 248
Target Start/End: Complemental strand, 5724124 - 5724093
Alignment:
| Q |
217 |
gggtggcacttcagtgccattgaaaaactaat |
248 |
Q |
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| T |
5724124 |
gggtggcacttcagtgccattgaaaaactaat |
5724093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 33294734 - 33294701
Alignment:
| Q |
215 |
tggggtggcacttcagtgccattgaaaaactaat |
248 |
Q |
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| T |
33294734 |
tggggtggcacttcagtgccattgaaaaactaat |
33294701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 32839005 - 32838973
Alignment:
| Q |
216 |
ggggtggcacttcagtgccattgaaaaactaat |
248 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
32839005 |
ggggtggcacttcagtgccattgaaaaactaat |
32838973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 33293776 - 33293808
Alignment:
| Q |
216 |
ggggtggcacttcagtgccattgaaaaactaat |
248 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
33293776 |
ggggtggcacttcagtgccattgaaaaactaat |
33293808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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