View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18408_low_15 (Length: 238)
Name: NF18408_low_15
Description: NF18408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18408_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 13203660 - 13203435
Alignment:
| Q |
1 |
ctcaaattattagtgctatcgacgtatcagtgtctgtatcgtgtccggtattcgtatccgtgcttcatagtacagaaccatctcaagctttaaaactaat |
100 |
Q |
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| T |
13203660 |
ctcaaattattagtgttgttgacgtatcagtgtttgtgtcgtgtcgggtatccgtatccgtgcttcataggacagaaccatctcaagctttaaaactaat |
13203561 |
T |
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| Q |
101 |
ataactcaannnnnnnnn---aattatatatgatatttcaatctctgaccattcactttttagatttaatttggatgagcatacaaggtcggccactcga |
197 |
Q |
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| T |
13203560 |
ataactcaattttttttttttaattatatatgatatttcaatctctgatcattcactttttagatttaatttggatgagcatacaaggtcggccactcga |
13203461 |
T |
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| Q |
198 |
ccttagggtaaggctattaaagttct |
223 |
Q |
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|||| ||||||||||||||||||||| |
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| T |
13203460 |
cctttgggtaaggctattaaagttct |
13203435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 27945060 - 27944991
Alignment:
| Q |
1 |
ctcaaattattagtgctatcgacgtatcagtgtctgtatcgtgtccggtattcgtatccgtgcttcatag |
70 |
Q |
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| T |
27945060 |
ctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag |
27944991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 7328731 - 7328802
Alignment:
| Q |
1 |
ctcaaattattagtgctatcgacgtatcagtgtctgtatcgtgtccggtattcgtatccgtgcttcatagta |
72 |
Q |
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| T |
7328731 |
ctcaaattattagcagtatcgacgtgttaatgtctgtgtcgtgttcggtgtccgtatccgtgcttcatagta |
7328802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 19820434 - 19820503
Alignment:
| Q |
1 |
ctcaaattattagtgctatcgacgtatcagtgtctgtatcgtgtccggtattcgtatccgtgcttcatag |
70 |
Q |
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| T |
19820434 |
ctcaaattattagcggtgtcggagtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag |
19820503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 8365560 - 8365628
Alignment:
| Q |
2 |
tcaaattattagtgctatcgacgtatcagtgtctgtatcgtgtccggtattcgtatccgtgcttcatag |
70 |
Q |
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| T |
8365560 |
tcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtctggtgtccgtatccgtgcttcatag |
8365628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 55401093 - 55401025
Alignment:
| Q |
2 |
tcaaattattagtgctatcgacgtatcagtgtctgtatcgtgtccggtattcgtatccgtgcttcatag |
70 |
Q |
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||||||||||||| | ||| |||||||||||| || |||| |||||| | |||||| ||||||||||| |
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| T |
55401093 |
tcaaattattagttgtgtcggcgtatcagtgtccgtgtcgtatccggtgtccgtatctgtgcttcatag |
55401025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18276540 - 18276492
Alignment:
| Q |
1 |
ctcaaattattagtgctatcgacgtatcagtgtctgtatcgtgtccggt |
49 |
Q |
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| T |
18276540 |
ctcaaattattagcggtgtcggcatatcagtgtctgtatcgtgtccggt |
18276492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 20539715 - 20539783
Alignment:
| Q |
2 |
tcaaattattagtgctatcgacgtatcagtgtctgtatcgtgtccggtattcgtatccgtgcttcatag |
70 |
Q |
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|||||||||||| | ||||||| |||||||| || |||||||| || | |||||||||||||||||| |
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| T |
20539715 |
tcaaattattagctgtgtcgacgtgtcagtgtccgtgtcgtgtccagtgtccgtatccgtgcttcatag |
20539783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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