View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18408_low_2 (Length: 494)

Name: NF18408_low_2
Description: NF18408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18408_low_2
NF18408_low_2
[»] chr2 (2 HSPs)
chr2 (340-454)||(30975250-30975364)
chr2 (282-324)||(30975414-30975456)
[»] chr5 (1 HSPs)
chr5 (392-454)||(19909626-19909688)
[»] chr4 (2 HSPs)
chr4 (44-117)||(25569268-25569341)
chr4 (282-324)||(15856545-15856587)
[»] chr6 (2 HSPs)
chr6 (451-494)||(5099736-5099779)
chr6 (451-494)||(5135004-5135047)


Alignment Details
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 340 - 454
Target Start/End: Complemental strand, 30975364 - 30975250
Alignment:
Q  340 ccttcgaaatttgatgtcactggttgcctgagatttaaagtaatgtttggcgattctattattcattttttctctgttttattctcattaatctcatttg 439  Q
    |||| |||||||||||||||||||||||| |||||||||||||| ||| |  ||||| ||||||||||||||| || |||||| ||||||||||||||||    
T  30975364 cctttgaaatttgatgtcactggttgccttagatttaaagtaatttttagttattctgttattcattttttctttgctttattttcattaatctcatttg 30975265  T
Q  440 aatgataccaactat 454  Q
    |||||||||||||||    
T  30975264 aatgataccaactat 30975250  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 324
Target Start/End: Complemental strand, 30975456 - 30975414
Alignment:
Q  282 tatagtgtgtatagttggttggctattttgaataattgagagt 324  Q
    |||| ||||||||||||||||||||||||||| ||||| ||||    
T  30975456 tataatgtgtatagttggttggctattttgaacaattgtgagt 30975414  T

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Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 392 - 454
Target Start/End: Original strand, 19909626 - 19909688
Alignment:
Q  392 attctattattcattttttctctgttttattctcattaatctcatttgaatgataccaactat 454  Q
    ||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  19909626 attctgttattcattttttctttgctttattctcattaatctcatttgaatgataccaactat 19909688  T

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Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 25569268 - 25569341
Alignment:
Q  44 tgttgtggatcgatcaaatatagtttcagacagtggattacagatttcatgtgtaaattaattgagtgctgggg 117  Q
    |||||||||| |||||||||||||||||||||||||||| || ||||| |||||| |||| | |||||||||||    
T  25569268 tgttgtggattgatcaaatatagtttcagacagtggattgcaaatttcttgtgtagattagtggagtgctgggg 25569341  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 324
Target Start/End: Complemental strand, 15856587 - 15856545
Alignment:
Q  282 tatagtgtgtatagttggttggctattttgaataattgagagt 324  Q
    |||| ||||||||||||||||||||||||||| ||||| ||||    
T  15856587 tataatgtgtatagttggttggctattttgaacaattgtgagt 15856545  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 451 - 494
Target Start/End: Original strand, 5099736 - 5099779
Alignment:
Q  451 ctataagcagcttttaaccccaatcacgactatgacactgttag 494  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  5099736 ctataagcagcttttaacccgaatcacgactatgacactgttag 5099779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 451 - 494
Target Start/End: Original strand, 5135004 - 5135047
Alignment:
Q  451 ctataagcagcttttaaccccaatcacgactatgacactgttag 494  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  5135004 ctataagcagcttttaacccgaatcacgactatgacactgttag 5135047  T

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