View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18408_low_3 (Length: 443)
Name: NF18408_low_3
Description: NF18408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18408_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 3 - 426
Target Start/End: Original strand, 4842201 - 4842622
Alignment:
| Q |
3 |
cagatgatggtcataaaaaatcgttatatagttttagcaacataaaaaaccgttatgtcacggctcggatcacgtcgtagacctttatttaaaactcttc |
102 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4842201 |
cagatgatggtcataaaaaatcgttgtatagttttagcaacataaaaaaccgttatgtcacggctcggatcacgtcgtagacctttgtttaaaactcttc |
4842300 |
T |
|
| Q |
103 |
aataatttgcccctcttcttctagaatcacaaaacggttacaacnnnnnnngcatcttactcgacatatatatata-cacatgcaatcattgataacgat |
201 |
Q |
| |
|
|||||||||| |||||| ||||||||||| ||||| |||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||| || |
|
|
| T |
4842301 |
aataatttgctcctctttttctagaatcataaaacagttacaacaaaaaaagcatcttactcgatatatatatataacacatgcaatcattaataacaat |
4842400 |
T |
|
| Q |
202 |
taggtgaaaaacttccaggtctacaagatgactcatagtcacttagttcttaattcttttttgtgcgtggtacgagtccggatacaagctaaattacaat |
301 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4842401 |
taggtgaaaaacttccaggtctataagatgactcatagtcacttaattcttaattcttttttgtgcgtggtacgagtctggatacaagctaaattacaat |
4842500 |
T |
|
| Q |
302 |
tctcaaagcattatcaacatggtgacaatatacatctttcnnnnnnnnnnnnntggtgacaatatacatattggctacactattattgtttattatatgt |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4842501 |
tctcaaagcattatcaacatggtgacaatatacatctttc---aaaaaaaaaatggtgacaatatacatattgactacactattattgtttattatatgt |
4842597 |
T |
|
| Q |
402 |
tctaatatattattgatacgttatg |
426 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
4842598 |
tctaatatattattgatacgttatg |
4842622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 4846386 - 4846448
Alignment:
| Q |
84 |
cctttatttaaaactcttcaataatttgcccctcttcttctagaatcacaaaacggttacaac |
146 |
Q |
| |
|
|||||||||||||| |||||||||||||| | |||||||||||||||||||||| ||||||| |
|
|
| T |
4846386 |
cctttatttaaaacccttcaataatttgctcatcttcttctagaatcacaaaacaattacaac |
4846448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 18727201 - 18727255
Alignment:
| Q |
83 |
acctttatttaaaactcttcaataatttgcccctcttcttctagaatcacaaaac |
137 |
Q |
| |
|
||||||||||||||||||| ||||||| | ||||| |||||||||||||||||| |
|
|
| T |
18727201 |
acctttatttaaaactctttaataattgtctcctctacttctagaatcacaaaac |
18727255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 4794203 - 4794266
Alignment:
| Q |
232 |
actcatagtcacttagttcttaattcttttttgtgcgtggtacgagtccggatacaagctaaat |
295 |
Q |
| |
|
|||||||||| ||| |||||||||||| |||||| ||||||| ||||| || |||||| ||||| |
|
|
| T |
4794203 |
actcatagtcgcttggttcttaattctcttttgtacgtggtaagagtcggggtacaaggtaaat |
4794266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 10775999 - 10776035
Alignment:
| Q |
14 |
cataaaaaatcgttatatagttttagcaacataaaaa |
50 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
10775999 |
cataaaaaaccgttatatagttttaacaacataaaaa |
10776035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University