View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18408_low_6 (Length: 379)
Name: NF18408_low_6
Description: NF18408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18408_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 10 - 362
Target Start/End: Original strand, 48121087 - 48121439
Alignment:
| Q |
10 |
attatacttcaatcagtttatattttatcttccaataaagtatattacaagtgtgctatgtatttctcaaatgcgcatgagcaccatataaattttattc |
109 |
Q |
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| T |
48121087 |
attacacttcaatcagtttatattttatcttccaataaagtatattacaagtgtgctatgtatttctcaaatgtgcatgagcaccatataaattttattc |
48121186 |
T |
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| Q |
110 |
aatttcaatatatatatttatagtccaccaagttaagactgtttgatgtaattacgatgatggagttgtctttcatagacaatccaaaataccaaggaca |
209 |
Q |
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| T |
48121187 |
aatttcaatatatatatttatagtccaccaagttaagactgtttgatgtaattacgatgatggagttgtctttcatagacaatccaaaataccaaggaca |
48121286 |
T |
|
| Q |
210 |
acactgcagctacagataccacatttgatccccaataaatatatttagtacatctctctaggccaggacaatagttgttgttaatatctacgaacatttt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48121287 |
acactgcagctacagataccacatttgatccccaataaatatatttagtacatctctctaggccaggacaatagttgttgttaatatctacgaacatttt |
48121386 |
T |
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| Q |
310 |
tcgaacaaaagtacaatccattaaatcaaccaaaaatggtccatagtgataca |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48121387 |
tcgaacaaaagtacaatccattaaatcaaccaaaaatggtccatagtgataca |
48121439 |
T |
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