View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18408_low_7 (Length: 361)
Name: NF18408_low_7
Description: NF18408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18408_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 350
Target Start/End: Original strand, 45128907 - 45129240
Alignment:
| Q |
17 |
atttgtccacaaatctactagtttctttactcaccaatcccataacctttgaacaaagaggtgaaactgagtctctattgtactcacttacataacgaga |
116 |
Q |
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| T |
45128907 |
atttgtccacaaatctactagtttctttactcaccaatcccataacctttgaacaaagaggtgaaactgagtctctattgtactcacttacataacgaga |
45129006 |
T |
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| Q |
117 |
gtaattacacactctagtgaacatgttgtaagttgcatctgatattagtccatgtgaccaaaagaattcagcccttgaattgaaatcagttgcatattct |
216 |
Q |
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| T |
45129007 |
gtaattacacactctagtgaacatgttgtaagttgcatctgatattagtccatgtgaccaaaagaattcagcccttgaattgaaatcagttgcatattct |
45129106 |
T |
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| Q |
217 |
agaactggatttcccaactgcaattcaactttggtatcaacagctagcaaattgtatggaatnnnnnnnntcatcaatgtagcattacttaccgctatgc |
316 |
Q |
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| T |
45129107 |
agaactggatttcccaactgcaattcaactttggtatcaacagctagcaaattgtatggaataaaaaaaatcatcaatgtagccttacttacggctatgc |
45129206 |
T |
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| Q |
317 |
ctttaaggttgaatatcttgtttcttttgttcat |
350 |
Q |
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| T |
45129207 |
ctttaaggttgaatatcttgtttcttttgttcat |
45129240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 61 - 240
Target Start/End: Original strand, 40280806 - 40280985
Alignment:
| Q |
61 |
acctttgaacaaagaggtgaaactgagtctctattgtactcacttacataacgagagtaattacacactctagtgaacatgttgtaagttgcatctgata |
160 |
Q |
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| T |
40280806 |
acctttgaacaaagcagggaaatggagtttctatagtactcacttacatactgcgaataattgcagcctgcggtgaacattttgtaagttgaatctgata |
40280905 |
T |
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| Q |
161 |
ttagtccatgtgaccaaaagaattcagcccttgaattgaaatcagttgcatattctagaactggatttcccaactgcaat |
240 |
Q |
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| T |
40280906 |
tcaatccatgagaccagaagaactcagcccttgaattgaagtcagtggcatattctagaagtggatttcccaactgcaat |
40280985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 6632284 - 6632346
Alignment:
| Q |
165 |
tccatgtgaccaaaagaattcagcccttgaattgaaatcagttgcatattctagaactggatt |
227 |
Q |
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| T |
6632284 |
tccatgagaccaaaagaactcagctcttgaattaaaatctgttgcaaattctaaaactggatt |
6632346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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