View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18409_high_1 (Length: 543)
Name: NF18409_high_1
Description: NF18409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18409_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 17 - 529
Target Start/End: Original strand, 52170304 - 52170816
Alignment:
| Q |
17 |
cacttttgatgatctcaatcaccaattttccatcatgtctctgtgagaatgatgatatccaacacacgaactgcaacgacgcttttatctgcgaaagtag |
116 |
Q |
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| T |
52170304 |
cacttttgatgatctcaatcaccaattttccatcatgtctctgtgagaatgatgatatccaacacacgaactgcaacgacgcttttatctgcgaaagtag |
52170403 |
T |
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| Q |
117 |
caacatcacaaatctcaagtatccgttctggggaggaaatagaggaaagtattgcggtgtgaatgatgatcctaatatggaactcacatgtgaggacagt |
216 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52170404 |
caacatcacaaatctcaagtatccgttcaggggaggaaatagaggaaagtattgcggtgtgaatgatgatcctaatatggaactcacatgtgaggacagt |
52170503 |
T |
|
| Q |
217 |
gtccccaagttaacaatggatgattctttcttgaaatacagtattcttgaatgggacaattcaacacagaaactcagagttactagggaagattactcga |
316 |
Q |
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| T |
52170504 |
gtccccaagttaacaacggatgattctttcttgaaatacagtattcttgaatgggacaattcaacacagaagctcagagttactagggaagattactcga |
52170603 |
T |
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| Q |
317 |
gagatgatgtttgtgttcctgtcgacaacatcacattcaatagcagtttgtttaaactttatgatgatgtcgctaacgtgactttgttttactattgcct |
416 |
Q |
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| T |
52170604 |
gagatgatgtttgtgttcctgtcgacaacatcacattcaatagcactttgtttaaactttatgatgatgtcgctaacgtgactttgttttactattgcct |
52170703 |
T |
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| Q |
417 |
tcttacaactgaaactctaccgaatacgtttcacagtgttgactgtagtgataattcatcagttttatacacccttgttgatccttcttcagctacttac |
516 |
Q |
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| T |
52170704 |
tcttacaactgaaactctaccgaatacgtttcacagtgttgaatgtagtgataattcatcagttttatacacccttgttgatccttctacagctacttac |
52170803 |
T |
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| Q |
517 |
tcggacctctgtg |
529 |
Q |
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| T |
52170804 |
tcggacctctgtg |
52170816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 20 - 297
Target Start/End: Complemental strand, 31610640 - 31610369
Alignment:
| Q |
20 |
ttttgatgatctcaatcaccaattttccatcatgtctctgtgagaatgatgatatccaacacacgaactgcaacgacgcttttatctgcgaaagtagcaa |
119 |
Q |
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| T |
31610640 |
ttttgatgatctcaatcaccaaaattccaacatgtctttgtgacaacaataatatccaacacactaactgcaacaacgcttttacctgcgaaagtagcag |
31610541 |
T |
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| Q |
120 |
catcacaaatctcaagtatccgttctggggaggaaatagaggaaagtattgcggtgtgaatgatgatcctaatatggaactcacatgtgaggacagtgtc |
219 |
Q |
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|||| |||| ||||||||||||| |||||||||||| |||| ||||||||| ||||| || ||||||||| ||||| ||| ||| || | |||||| |
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| T |
31610540 |
catctcaaacctcaagtatccgtactggggaggaaacagagaaaagtattgtggtgtttctggtgatcctaagatggagctcgtatgcgaaggaagtgtc |
31610441 |
T |
|
| Q |
220 |
cccaagttaacaatggatgattctttcttgaaatacagtattcttgaatgggacaattcaacacagaaactcagagtt |
297 |
Q |
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| T |
31610440 |
cctaagataacaat------taatttggtcaaataccgtattcttgaatgggacaatacaacacagagactcagagtt |
31610369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 313
Target Start/End: Complemental strand, 31621257 - 31621194
Alignment:
| Q |
250 |
aaatacagtattcttgaatgggacaattcaacacagaaactcagagttactagggaagattact |
313 |
Q |
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| T |
31621257 |
aaataccgtattcttgaatgggacaatacaacacagaaactcacagtcgctagagacgattact |
31621194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 313
Target Start/End: Complemental strand, 31636252 - 31636189
Alignment:
| Q |
250 |
aaatacagtattcttgaatgggacaattcaacacagaaactcagagttactagggaagattact |
313 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||| ||| |||| || ||||||| |
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| T |
31636252 |
aaataccgtattcttgaatgggacaatacaacacagaaactcacagtcgctagagacgattact |
31636189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 31597517 - 31597456
Alignment:
| Q |
115 |
agcaacatcacaaatctcaagtatccgttctggggaggaaatagaggaaagtattgcggtgt |
176 |
Q |
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| T |
31597517 |
agcaacatcacaaatcttgaatatccattctggggagaaaatagaggaaattattgtggtgt |
31597456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 31621415 - 31621351
Alignment:
| Q |
86 |
actgcaacgacgcttttatctgcgaaagtagcaacatcacaaatctcaagtatccgttctgggga |
150 |
Q |
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| T |
31621415 |
actgcaacgaagcttttgaatgcggaagtagcagcatcacaaacctcaagtatccattctgggga |
31621351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 31636410 - 31636346
Alignment:
| Q |
86 |
actgcaacgacgcttttatctgcgaaagtagcaacatcacaaatctcaagtatccgttctgggga |
150 |
Q |
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| T |
31636410 |
actgcaacgaagcttttgaatgcggaagtagcagcatcacaaacctcaagtatccattctgggga |
31636346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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