View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18409_high_10 (Length: 260)
Name: NF18409_high_10
Description: NF18409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18409_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 34776237 - 34775996
Alignment:
| Q |
1 |
aacaagagactccaaaccctcgaacacgcgtttgttctcttggagaacaagcttaaacattctagaatcagatgccatagcatcttgaaacatactcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34776237 |
aacaagagactccaaaccctcgaaaacgcgtttattctcttggagaacaagcttaaacattctagaatcagatgccatagcatcttgaaacatactcaaa |
34776138 |
T |
|
| Q |
101 |
gtactagattcagaatctttgttaagaaaatcccaaaaactctcccctgttgcacactcaaacaatgtttgttccttatcttcattgaaccatttctttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34776137 |
gtactagattcagaatctttgttaagaaaatcccaaaaactctcccctgttgcacactcaaacaatgtttgttccttatcttcattgaaccatttctttg |
34776038 |
T |
|
| Q |
201 |
aggaactccacatgtctaaagaacttggatgaagtgctcctt |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34776037 |
aggaactccacatgtctaaagaacttggatgaagtgctcctt |
34775996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 34784449 - 34784208
Alignment:
| Q |
1 |
aacaagagactccaaaccctcgaacacgcgtttgttctcttggagaacaagcttaaacattctagaatcagatgccatagcatcttgaaacatactcaaa |
100 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||||||| || ||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
34784449 |
aacaagagattccaaaccctcaaacacattcttgttctcatgaagagcaagcttaaacattctagaatcagcagccatagcatcttgaaacaaactcaaa |
34784350 |
T |
|
| Q |
101 |
gtactagattcagaatctttgttaagaaaatcccaaaaactctcccctgttgcacactcaaacaatgtttgttccttatcttcattgaaccatttctttg |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| | |||| ||||||||||||||||| | |||||||||||||| ||||||||||||||||||| |
|
|
| T |
34784349 |
gtaccagattcagaatctttgttaagaaaatcccaatagttctctcctgttgcacactcaaaaagagtttgttccttatcctcattgaaccatttctttg |
34784250 |
T |
|
| Q |
201 |
aggaactccacatgtctaaagaacttggatgaagtgctcctt |
242 |
Q |
| |
|
| || |||||||||||| |||||||| |||||| ||||||| |
|
|
| T |
34784249 |
aagacttccacatgtctatagaacttgcatgaagcgctcctt |
34784208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University