View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18409_high_14 (Length: 231)
Name: NF18409_high_14
Description: NF18409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18409_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 30293624 - 30293423
Alignment:
| Q |
14 |
cagagacaaagtt-atataaaaagagaaattaatcatcgtacatgaacg----tgatgtggctaacaaaagagcaagttgaatgtgtggaaagcatgaca |
108 |
Q |
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| T |
30293624 |
cagagacaaagtttatataaaaagagaaatcaatcatcgtacatgaacgaacgtgatgtgggtaacaaaagagcaagttgaatgtgtggaaagcatggca |
30293525 |
T |
|
| Q |
109 |
acataaataacgaaataatccnnnnnnnnnnncagtatgttaattcaaccggtagacttcactaaataattctcaagatgttactaaacatgctcaatat |
208 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30293524 |
acataaataacgaaataatcc----aaaaaaacagtatgttaattcaaccagtagacttcactaaataattctcaagatgttactaaacatgctcaatat |
30293429 |
T |
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| Q |
209 |
aaatat |
214 |
Q |
| |
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|||||| |
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| T |
30293428 |
aaatat |
30293423 |
T |
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