View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18409_high_4 (Length: 442)
Name: NF18409_high_4
Description: NF18409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18409_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 28 - 410
Target Start/End: Original strand, 2791041 - 2791422
Alignment:
| Q |
28 |
atcaactctaacgtctgaatacttcaccactttggaccttgcatataatcctattgcataactttcttaataatcggtgttgtaattgtagatgacttca |
127 |
Q |
| |
|
|||||| |||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2791041 |
atcaacactaacgtctgaatacttcgctactttggaccttgcatatagtcctattgcataactttcttaataatcg---ttgtaattgtagatgacttca |
2791137 |
T |
|
| Q |
128 |
tagaattggccacannnnnnnnnnaaagaacgtattttcttttatttagaagttaatttcaaaacgacgtatgactcaataaattagaatgttcttgatt |
227 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2791138 |
tagaattggccacgttttttttttaaagaacgtattttcttttatttagaagttaatttcaaaacgacatatgactcaataaattagaatgttcttgatt |
2791237 |
T |
|
| Q |
228 |
tcatgttgtttacaaagggactcactagtagtcctgtgaatgagtttgaagcaaaaagagttgggataacgagatacattttcccactttaattttt--a |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
2791238 |
tcatgttgtttacaaagggactcactagtagtcctgtgaatgagtttgaagcaaaaagggttgggataaggagatacattttcccactttaatttttaaa |
2791337 |
T |
|
| Q |
326 |
atagtgaccgaagggtttgctatcctgtatttttcaatttataggcgatacaaccataaccttctcaaggattattagaaggtaa |
410 |
Q |
| |
|
| |||||| |||||||| ||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2791338 |
acagtgactgaagggttagctgtcctgtattcttcaatttataagcgatacaaccataatcttctcaaggattattagaaggtaa |
2791422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University