View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18409_high_8 (Length: 317)

Name: NF18409_high_8
Description: NF18409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18409_high_8
NF18409_high_8
[»] chr4 (1 HSPs)
chr4 (14-317)||(5900834-5901137)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 14 - 317
Target Start/End: Original strand, 5900834 - 5901137
Alignment:
Q  14 cagccctaacaaaaacataactaacataaccttatcaagtaaacacaatcacacataacctaaattaaaacaaaatcatcccnnnnnnnntacttttcaa 113  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||| |||||        ||||||||||    
T  5900834 cagccctaacaaaaacataactaacatcaccttatcaagtaaacacacccacacataacctaaattaaaacaaaatgatcccaaaaaaaatacttttcaa 5900933  T
Q  114 ccctaattaatcaagaaaatgtgttctcaccgagattcgattgaggaactgcagcaggcactccattcgcattggttaacggaatacttttactagcatt 213  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5900934 ccctaattaatcaagaaaatgtgttctcaccgagattcgcttgaggaactgcagcaggcactccattcgcattggttaacggaatacttttactagcatt 5901033  T
Q  214 gtaaacattcataacattctgcacaccattcaagaacatctgaacccggttcttctcttgttccatacaaaccctttcttgatccaacatcactctctgc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5901034 gtaaacattcataacattctgcacaccattcaagaacatctgaacccggttcttctcttgttccatacaaaccctttcttgatccaacatcactttctgc 5901133  T
Q  314 tcct 317  Q
    ||||    
T  5901134 tcct 5901137  T

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