View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18409_low_11 (Length: 250)
Name: NF18409_low_11
Description: NF18409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18409_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 33861521 - 33861613
Alignment:
| Q |
1 |
ttattagtccttccttaaacttgaaattgcaaaaagatctgccaattcaacaaagaaaacaacaagacaagacatgagtaaaataaataaatctcagt |
98 |
Q |
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| T |
33861521 |
ttattagtccttccttaaacttgaaattgcaaaaagatctgccaattcaacaaagaaaaca-----acaagacatgagtaaaataaataaatctcagt |
33861613 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 174 - 240
Target Start/End: Original strand, 33862178 - 33862244
Alignment:
| Q |
174 |
ttagccgtaaattctgtttcaatttcaaattatatatatagttttctacttacggagtcgccctttg |
240 |
Q |
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| T |
33862178 |
ttagccgtaaattctgtttcaatttcaaattatatatatagttttctacttacggagtcgccctttg |
33862244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 34691507 - 34691555
Alignment:
| Q |
14 |
cttaaacttgaaattgcaaaaagatctgccaattcaacaaagaaaacaa |
62 |
Q |
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| T |
34691507 |
cttaaacttgaaatctcaaacagatctgtcaattcaacacagaaaacaa |
34691555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 34713919 - 34713967
Alignment:
| Q |
14 |
cttaaacttgaaattgcaaaaagatctgccaattcaacaaagaaaacaa |
62 |
Q |
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| T |
34713919 |
cttaaacttgaaatctcaaacagatctgtcaattcaacacagaaaacaa |
34713967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 45993097 - 45993040
Alignment:
| Q |
12 |
tccttaaacttgaaattgcaaaaagatctgccaattcaacaaagaaaacaacaagaca |
69 |
Q |
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| T |
45993097 |
tccttaaacttgaaatcacaaaaagatctgcgaattcaacacagaaaacaacaagaca |
45993040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 45983317 - 45983260
Alignment:
| Q |
12 |
tccttaaacttgaaattgcaaaaagatctgccaattcaacaaagaaaacaacaagaca |
69 |
Q |
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|||||||||||||||| |||||| |||||||||||||||| ||||| ||||||||| |
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| T |
45983317 |
tccttaaacttgaaatcacaaaaatatctgccaattcaacacagaaagtaacaagaca |
45983260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 43076396 - 43076364
Alignment:
| Q |
30 |
caaaaagatctgccaattcaacaaagaaaacaa |
62 |
Q |
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|||||| |||||||||||||||||||||||||| |
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|
| T |
43076396 |
caaaaatatctgccaattcaacaaagaaaacaa |
43076364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 4787112 - 4787055
Alignment:
| Q |
12 |
tccttaaacttgaaattgcaaaaagatctgccaattcaacaaagaaaacaacaagaca |
69 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||| |||||| ||||||||| |
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|
| T |
4787112 |
tccttaaacttgaaatcacaaaaagatctgccaattgaacacagaaaataacaagaca |
4787055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 4298153 - 4298209
Alignment:
| Q |
12 |
tccttaaacttgaaattgcaaaaagatctgccaattcaacaaagaaaacaacaagaca |
69 |
Q |
| |
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|||||||| ||||||| ||||||||||||||||||||||| |||||| ||||||||| |
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| T |
4298153 |
tccttaaa-ttgaaatcacaaaaagatctgccaattcaacacagaaaataacaagaca |
4298209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 16352338 - 16352387
Alignment:
| Q |
12 |
tccttaaacttgaaattgcaaaaagatctgccaattcaacaaagaaaaca |
61 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||||||| |||||||| |
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| T |
16352338 |
tccttaaacttgaaatcataaaaatatctgccaattcaacacagaaaaca |
16352387 |
T |
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