View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18409_low_13 (Length: 236)

Name: NF18409_low_13
Description: NF18409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18409_low_13
NF18409_low_13
[»] chr2 (4 HSPs)
chr2 (16-236)||(33860982-33861200)
chr2 (83-167)||(34691038-34691122)
chr2 (83-167)||(34713450-34713534)
chr2 (83-167)||(16232381-16232465)
[»] chr1 (10 HSPs)
chr1 (83-224)||(45993425-45993566)
chr1 (83-233)||(43045205-43045355)
chr1 (83-233)||(43045658-43045808)
chr1 (83-233)||(43066599-43066749)
chr1 (83-233)||(43084086-43084236)
chr1 (83-158)||(45983705-45983780)
chr1 (83-190)||(38137827-38137934)
chr1 (44-158)||(40034691-40034797)
chr1 (114-233)||(3300972-3301091)
chr1 (140-224)||(7888712-7888796)
[»] chr4 (1 HSPs)
chr4 (83-233)||(4231678-4231828)
[»] chr5 (1 HSPs)
chr5 (83-236)||(16349350-16349503)
[»] chr8 (2 HSPs)
chr8 (83-158)||(4787459-4787534)
chr8 (96-191)||(1846616-1846711)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 33860982 - 33861200
Alignment:
Q  16 taaataaatggattattnnnnnnnnttgaaatacaagtttaaaggggctgaaaatataaatacaaatataccttgttgatgcagcagatcatttgaggca 115  Q
    |||||||||||||||||        ||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||    
T  33860982 taaataaatggattattaaaaaaaattgaaatacaagtttaaaggggctgaaaatataaatagaaata--ccttgttgatgcagcagatcatttgaggca 33861079  T
Q  116 caccaagagtgcaggcgagaagggcatgttcacgggtctgaccttgcttagaaaaaccaacttcaaaaccaccaggagaggaatcaacgataagaagagc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33861080 caccaagagtgcaggcgagaagggcatgttcacgggtctgaccatgcttagaaaaaccaacttcaaaaccaccaggagaggaatcaacgataagaagagc 33861179  T
Q  216 gcaatcagcataggatgtccc 236  Q
    |||||||||||||||||||||    
T  33861180 gcaatcagcataggatgtccc 33861200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 34691038 - 34691122
Alignment:
Q  83 ataccttgttgatgcagcagatcatttgaggcacaccaagagtgcaggcgagaagggcatgttcacgggtctgaccttgcttaga 167  Q
    |||||||||||  |||||||||||||||   ||||||||||||| |||| ||||| |||||||| | ||||||||| | ||||||    
T  34691038 ataccttgttgcagcagcagatcatttgcctcacaccaagagtgaaggcaagaagagcatgttcccaggtctgaccattcttaga 34691122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 34713450 - 34713534
Alignment:
Q  83 ataccttgttgatgcagcagatcatttgaggcacaccaagagtgcaggcgagaagggcatgttcacgggtctgaccttgcttaga 167  Q
    |||||||||||  |||||||||||||||   ||||||||||||| |||| ||||| |||||||| | ||||||||| | ||||||    
T  34713450 ataccttgttgcagcagcagatcatttgcctcacaccaagagtgaaggcaagaagagcatgttcccaggtctgaccattcttaga 34713534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 167
Target Start/End: Original strand, 16232381 - 16232465
Alignment:
Q  83 ataccttgttgatgcagcagatcatttgaggcacaccaagagtgcaggcgagaagggcatgttcacgggtctgaccttgcttaga 167  Q
    |||||||||||  |||||||||||||||   ||||||||||||| | || || || |||||||| | ||||||||| | ||||||    
T  16232381 ataccttgttgcagcagcagatcatttgcctcacaccaagagtgtacgcaagtagagcatgttcccaggtctgaccatccttaga 16232465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 224
Target Start/End: Complemental strand, 45993566 - 45993425
Alignment:
Q  83 ataccttgttgatgcagcagatcatttgaggcacaccaagagtgcaggcgagaagggcatgttcacgggtctgaccttgcttagaaaaaccaacttcaaa 182  Q
    |||||||||||  ||| ||||||||||||  ||||||||||||| |||| ||||| ||||||||||| |||||||| | ||| |||| |||  |||||||    
T  45993566 ataccttgttgcagcaacagatcatttgattcacaccaagagtgaaggcaagaagagcatgttcacgagtctgaccatcctttgaaataccggcttcaaa 45993467  T
Q  183 accaccaggagaggaatcaacgataagaagagcgcaatcagc 224  Q
    ||||| || || |||||||| ||| |||| ||| ||||||||    
T  45993466 accacgagtagtggaatcaatgatgagaacagcacaatcagc 45993425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 233
Target Start/End: Original strand, 43045205 - 43045355
Alignment:
Q  83 ataccttgttgatgcagcagatcatttgaggcacaccaagagtgcaggcgagaagggcatgttcacgggtctgaccttgcttagaaaaaccaacttcaaa 182  Q
    |||||||||||   ||||||||||||||   ||||||||||||| | || || || |||||||||||||||||||| | |||||||| |||  |||||||    
T  43045205 ataccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaa 43045304  T
Q  183 accaccaggagaggaatcaacgataagaagagcgcaatcagcataggatgt 233  Q
    |||||||| || |||||||| ||| ||||  || |||||||| | ||||||    
T  43045305 accaccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgt 43045355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 233
Target Start/End: Original strand, 43045658 - 43045808
Alignment:
Q  83 ataccttgttgatgcagcagatcatttgaggcacaccaagagtgcaggcgagaagggcatgttcacgggtctgaccttgcttagaaaaaccaacttcaaa 182  Q
    |||||||||||   ||||||||||||||   ||||||||||||| | || || || |||||||||||||||||||| | |||||||| |||  |||||||    
T  43045658 ataccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaa 43045757  T
Q  183 accaccaggagaggaatcaacgataagaagagcgcaatcagcataggatgt 233  Q
    |||||||| || |||||||| ||| ||||  || |||||||| | ||||||    
T  43045758 accaccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgt 43045808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 233
Target Start/End: Complemental strand, 43066749 - 43066599
Alignment:
Q  83 ataccttgttgatgcagcagatcatttgaggcacaccaagagtgcaggcgagaagggcatgttcacgggtctgaccttgcttagaaaaaccaacttcaaa 182  Q
    |||||||||||   ||||||||||||||   ||||||||||||| | || || || |||||||||||||||||||| | |||||||| |||  |||||||    
T  43066749 ataccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaa 43066650  T
Q  183 accaccaggagaggaatcaacgataagaagagcgcaatcagcataggatgt 233  Q
    |||||||| || |||||||| ||| ||||  || |||||||| | ||||||    
T  43066649 accaccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgt 43066599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 233
Target Start/End: Original strand, 43084086 - 43084236
Alignment:
Q  83 ataccttgttgatgcagcagatcatttgaggcacaccaagagtgcaggcgagaagggcatgttcacgggtctgaccttgcttagaaaaaccaacttcaaa 182  Q
    |||||||||||   ||||||||||||||   ||||||||||||| | || || || |||||||||||||||||||| | |||||||| |||  |||||||    
T  43084086 ataccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaa 43084185  T
Q  183 accaccaggagaggaatcaacgataagaagagcgcaatcagcataggatgt 233  Q
    |||||||| || |||||||| ||| ||||  || |||||||| | ||||||    
T  43084186 accaccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgt 43084236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 45983780 - 45983705
Alignment:
Q  83 ataccttgttgatgcagcagatcatttgaggcacaccaagagtgcaggcgagaagggcatgttcacgggtctgacc 158  Q
    |||||||||||  ||||||||||||||||  ||||||||||||| |||| ||||| ||||||||||||||||||||    
T  45983780 ataccttgttgcagcagcagatcatttgattcacaccaagagtgaaggcaagaagagcatgttcacgggtctgacc 45983705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 38137934 - 38137827
Alignment:
Q  83 ataccttgttgatgcagcagatcatttgaggcacaccaagagtgcaggcgagaagggcatgttcacgggtctgaccttgcttagaaaaaccaacttcaaa 182  Q
    |||||||||||  |||||||||||||||  |||||||||||  | | || ||||| |||||||||  ||||||||||| || |||| ||||| |||||||    
T  38137934 ataccttgttgcagcagcagatcatttggcgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataaccagcttcaaa 38137835  T
Q  183 accaccag 190  Q
    || |||||    
T  38137834 actaccag 38137827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 40034797 - 40034691
Alignment:
Q  44 aaatacaagtttaaaggggctgaaaatataaatacaaatataccttgttgatgcagcagatcatttgaggcacaccaagagtgcaggcgagaagggcatg 143  Q
    |||||||| ||||||||||||| ||||||||||||        |||||||  ||||||||||||||||  ||||||||||||  |||| ||||| |||||    
T  40034797 aaatacaactttaaaggggctggaaatataaatac--------cttgttgcagcagcagatcatttgattcacaccaagagtataggcaagaagagcatg 40034706  T
Q  144 ttcacgggtctgacc 158  Q
    ||||  |||||||||    
T  40034705 ttcagtggtctgacc 40034691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 233
Target Start/End: Original strand, 3300972 - 3301091
Alignment:
Q  114 cacaccaagagtgcaggcgagaagggcatgttcacgggtctgaccttgcttagaaaaaccaacttcaaaaccaccaggagaggaatcaacgataagaaga 213  Q
    ||||||||||||| | || ||||| || |||||||||||||| || | ||| || | |||  ||||||||||||| | || |||||||| ||| |||| |    
T  3300972 cacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgatataccggcttcaaaaccaccggtagtggaatcaatgatcagaaca 3301071  T
Q  214 gcgcaatcagcataggatgt 233  Q
    || |||||||| | ||||||    
T  3301072 gcacaatcagcttgggatgt 3301091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 7888796 - 7888712
Alignment:
Q  140 catgttcacgggtctgaccttgcttagaaaaaccaacttcaaaaccaccaggagaggaatcaacgataagaagagcgcaatcagc 224  Q
    ||||||||  ||||||||| | |||| |||||||  |||||||||||||||  | |||||||| ||| |||| ||| ||||||||    
T  7888796 catgttcagtggtctgaccatccttacaaaaaccggcttcaaaaccaccagttgtggaatcaatgatgagaacagcacaatcagc 7888712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 233
Target Start/End: Original strand, 4231678 - 4231828
Alignment:
Q  83 ataccttgttgatgcagcagatcatttgaggcacaccaagagtgcaggcgagaagggcatgttcacgggtctgaccttgcttagaaaaaccaacttcaaa 182  Q
    |||||||||||  |||||||||||||||   ||||||||||||| | || || || ||||||||||| |||||||| | ||| |||| |||| |||||||    
T  4231678 ataccttgttgcagcagcagatcatttgcctcacaccaagagtgaaagcaaggagagcatgttcacgagtctgaccatccttggaaataccagcttcaaa 4231777  T
Q  183 accaccaggagaggaatcaacgataagaagagcgcaatcagcataggatgt 233  Q
    ||||||||  | |||||||| ||| |||| ||| |||||||| | ||||||    
T  4231778 accaccagtggtggaatcaatgatgagaacagcacaatcagcttgggatgt 4231828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 236
Target Start/End: Original strand, 16349350 - 16349503
Alignment:
Q  83 ataccttgttgatgcagcagatcatttgaggcacaccaagagtgcaggcgagaagggcatgttcacgggtctgaccttgcttagaaaaaccaacttcaaa 182  Q
    |||||||||||  |||||||||||||||    |||||||||| | | ||  | || |||||||||||| ||||||| |  || |||| |||  || ||||    
T  16349350 ataccttgttgcagcagcagatcatttgcttgacaccaagagagtaagcatggagagcatgttcacggatctgaccattattggaaataccggctccaaa 16349449  T
Q  183 accaccaggagaggaatcaacgataagaagagcgcaatcagcataggatgtccc 236  Q
    |||| |||||| ||||||||||||||||||||| |||||||| | |||||||||    
T  16349450 accagcaggagtggaatcaacgataagaagagcacaatcagcttgggatgtccc 16349503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 4787534 - 4787459
Alignment:
Q  83 ataccttgttgatgcagcagatcatttgaggcacaccaagagtgcaggcgagaagggcatgttcacgggtctgacc 158  Q
    |||||||||||  |||||||||||||||   |||||||| |||| |||| ||||| ||||||||| ||||||||||    
T  4787534 ataccttgttgcagcagcagatcatttgcttcacaccaacagtgaaggcaagaagagcatgttcaagggtctgacc 4787459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 1846616 - 1846711
Alignment:
Q  96 gcagcagatcatttgaggcacaccaagagtgcaggcgagaagggcatgttcacgggtctgaccttgcttagaaaaaccaacttcaaaaccaccagg 191  Q
    ||||||||||||||| |  |||||||||| | |||| ||  |  ||||||||  ||||||||| | |||| |||||||| ||||||||||||||||    
T  1846616 gcagcagatcatttgtgaaacaccaagagcgtaggcaagttgaacatgttcattggtctgaccattcttacaaaaaccagcttcaaaaccaccagg 1846711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University