View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18409_low_2 (Length: 532)
Name: NF18409_low_2
Description: NF18409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18409_low_2 |
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| [»] scaffold0067 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 3634953 - 3635282
Alignment:
| Q |
18 |
acgtttacatgtttgtgtcatgttgggtccgtatttgtgtttgtgcttcataggttactaggagtctatgacccaacaaattattgtagtatcaatttaa |
117 |
Q |
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| T |
3634953 |
acgtttacatgtttgtgtcatgtcgggtccgtatttgtgtttgtgcttcataggttactaggagtctatgacccaacaaattattgtagtatcaatttaa |
3635052 |
T |
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| Q |
118 |
taagcagtgaagacacaatttgttagcttgcagtccaatttagtcctgacaaaaaataatactcaaattagtctatgatattgttatacaaatgagaaat |
217 |
Q |
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| T |
3635053 |
taagtagtgaagacacaatttgttagcttgcagtccaatttaatcctgacaaaaaataatactcaaattagtctatgatattgttatacaaatgagaaat |
3635152 |
T |
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| Q |
218 |
tagtagtccccgactcagtgtaacaggaattaatttcttccagtatgaaaatatcagaaactagtttgtgtattattttgtgtcgtgactaaattggact |
317 |
Q |
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| T |
3635153 |
tagtagtcccagactcagtgtaacaggaattaatttcttccagtatgaaaatatcagaaactagtttgtgtattattttgtgtcgtgactaaattggact |
3635252 |
T |
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| Q |
318 |
acaagaaaattttgagggaccaaatgggtc |
347 |
Q |
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| T |
3635253 |
acgagcaaattttgagggaccaaatgggtc |
3635282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 401 - 522
Target Start/End: Original strand, 3635338 - 3635459
Alignment:
| Q |
401 |
gttgcagaatgtgggaattctctgttggtttatatatgatcagtatttggccagactcactgttgtatgcagcaatatatggtgctgttgaatctgcttc |
500 |
Q |
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| T |
3635338 |
gttgcagaatgtgggaattctctgttggtttatatatgatcagtatttggccagactcactgttgtatgcagcaatatatggggctgttgaatctgcttc |
3635437 |
T |
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| Q |
501 |
cattgcattgtttggtcctttg |
522 |
Q |
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| T |
3635438 |
cattgcattgtttggtcctttg |
3635459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 402 - 518
Target Start/End: Original strand, 3644771 - 3644887
Alignment:
| Q |
402 |
ttgcagaatgtgggaattctctgttggtttatatatgatcagtatttggccagactcactgttgtatgcagcaatatatggtgctgttgaatctgcttcc |
501 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
3644771 |
ttgcagaatgtgggaattttctgttggtttatatatgatcagtatttggccagactcactgctctatgcagcaatatatggtgctgttgaatctgcttcc |
3644870 |
T |
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| Q |
502 |
attgcattgtttggtcc |
518 |
Q |
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| T |
3644871 |
attgcattgtttggtcc |
3644887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 25590 - 25641
Alignment:
| Q |
168 |
aaaaaataatactcaaattagtctatgatattgttatacaaatgagaaatta |
219 |
Q |
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| T |
25590 |
aaaaaataatactcaaattagtctgtgatatctttatataaatgacaaatta |
25641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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