View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18409_low_3 (Length: 448)

Name: NF18409_low_3
Description: NF18409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18409_low_3
NF18409_low_3
[»] chr7 (3 HSPs)
chr7 (13-408)||(38310937-38311330)
chr7 (28-97)||(44533571-44533640)
chr7 (96-141)||(44533582-44533627)
[»] chr6 (2 HSPs)
chr6 (105-155)||(6445326-6445376)
chr6 (96-146)||(344395-344445)
[»] chr5 (3 HSPs)
chr5 (109-157)||(13298021-13298070)
chr5 (104-145)||(15259749-15259790)
chr5 (61-97)||(13298027-13298063)
[»] chr3 (2 HSPs)
chr3 (96-145)||(31750952-31751001)
chr3 (96-145)||(25199246-25199295)
[»] chr1 (4 HSPs)
chr1 (114-157)||(14465062-14465106)
chr1 (105-145)||(28552052-28552092)
chr1 (61-95)||(14465070-14465104)
chr1 (104-140)||(48103929-48103965)
[»] chr2 (2 HSPs)
chr2 (96-157)||(25993668-25993730)
chr2 (96-142)||(29981754-29981800)
[»] chr8 (2 HSPs)
chr8 (96-141)||(2954101-2954146)
chr8 (104-145)||(25106757-25106798)
[»] chr4 (3 HSPs)
chr4 (96-141)||(54153484-54153529)
chr4 (109-145)||(31310658-31310694)
chr4 (109-141)||(32558860-32558892)


Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 13 - 408
Target Start/End: Original strand, 38310937 - 38311330
Alignment:
Q  13 catcacatcccaattgagctcatatcgatataaaactgtagacttgtgtcttgaaaattcatatgaaaattgattaaaaggacaatataaccatagattt 112  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38310937 catcccatcccaattgagctcatatc-atataaaactgtagacttgtgtcttgaaaattcatatgaaaattgattaaaaggacaatataaccatagattt 38311035  T
Q  113 aaatcttgaaaattcatatgtaaattgatcaaaggacgaaaatgaaattnnnnnnnnnncgaaattgttgtctaaaattaagttaaaggaggacgaaagt 212  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||          |||||||||||| ||||||||||||||||||||||||||||    
T  38311036 aaattttgaaaattcatatgtaaattgatcaaaggacgaaaatgaaattaaaaaaaa--cgaaattgttgtttaaaattaagttaaaggaggacgaaagt 38311133  T
Q  213 aatctttccttccttttatttcagtcacgtgtaaatgtgaagtaggaaaaacaataatgaatatatatattttaaagtgatgcttgacaaaataagaaca 312  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38311134 aatttttccttccttttatttcagtcacgtgtaaatgtgaagtaggaaaaacaataatgaatatagatattttaaagtgatgcttgacaaaataagaaca 38311233  T
Q  313 tcttttccacatgattggtttttgacaaaacaagaacatcgttacccatctttc-nnnnnnnnnngaacatcgttacccaaatggttagttttttat 408  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||           ||||||||||||||||||||||||||||||||    
T  38311234 tcttttccacatgattggtttttgacaaaacaagaacatccttacccatctttcaaaaaaaaaaagaacatcgttacccaaatggttagttttttat 38311330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 44533640 - 44533571
Alignment:
Q  28 gagctcatatcgatataaaactgtagacttgtgtcttgaaaattcatatgaaaattgattaaaaggacaa 97  Q
    ||||||||||||| |||||||  |||| |||  |||||||||| |||||| |||||||| ||||||||||    
T  44533640 gagctcatatcgaaataaaaccatagatttgaatcttgaaaatccatatgcaaattgataaaaaggacaa 44533571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 44533627 - 44533582
Alignment:
Q  96 aatataaccatagatttaaatcttgaaaattcatatgtaaattgat 141  Q
    |||| |||||||||||| |||||||||||| |||||| ||||||||    
T  44533627 aataaaaccatagatttgaatcttgaaaatccatatgcaaattgat 44533582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 6445376 - 6445326
Alignment:
Q  105 atagatttaaatcttgaaaattcatatgtaaattgatcaaaggacgaaaat 155  Q
    ||||||| |||| ||||||||||||||| ||||||||||||||||||||||    
T  6445376 atagattaaaattttgaaaattcatatgcaaattgatcaaaggacgaaaat 6445326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 344445 - 344395
Alignment:
Q  96 aatataaccatagatttaaatcttgaaaattcatatgtaaattgatcaaag 146  Q
    |||| ||| ||| ||||||||||||||||||||||| ||||||||||||||    
T  344445 aataaaactataaatttaaatcttgaaaattcatatataaattgatcaaag 344395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 13298070 - 13298021
Alignment:
Q  109 atttaaatcttgaaaattcatatgtaaattgatc-aaaggacgaaaatga 157  Q
    |||| ||||||||||||||||||||||||||||| ||||||| |||||||    
T  13298070 atttgaatcttgaaaattcatatgtaaattgatcaaaaggacaaaaatga 13298021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 15259790 - 15259749
Alignment:
Q  104 catagatttaaatcttgaaaattcatatgtaaattgatcaaa 145  Q
    |||||||||||||||| |||||||||||| |||||| |||||    
T  15259790 catagatttaaatcttaaaaattcatatgcaaattgttcaaa 15259749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 13298063 - 13298027
Alignment:
Q  61 tcttgaaaattcatatgaaaattgattaaaaggacaa 97  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  13298063 tcttgaaaattcatatgtaaattgatcaaaaggacaa 13298027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 31750952 - 31751001
Alignment:
Q  96 aatataaccatagatttaaatcttgaaaattcatatgtaaattgatcaaa 145  Q
    |||| |||||||||||| ||||||||||||||||||| ||||| ||||||    
T  31750952 aataaaaccatagatttgaatcttgaaaattcatatgcaaattaatcaaa 31751001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 25199295 - 25199246
Alignment:
Q  96 aatataaccatagatttaaatcttgaaaattcatatgtaaattgatcaaa 145  Q
    |||| ||| |||||||| |||||| |||||||||||| ||||||||||||    
T  25199295 aataaaactatagatttgaatcttaaaaattcatatgcaaattgatcaaa 25199246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 157
Target Start/End: Complemental strand, 14465106 - 14465062
Alignment:
Q  114 aatcttgaaaattcatatgtaaattgatc-aaaggacgaaaatga 157  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||    
T  14465106 aatcttgaaaattcatatgaaaattgatcaaaaggacgaaaatga 14465062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 28552092 - 28552052
Alignment:
Q  105 atagatttaaatcttgaaaattcatatgtaaattgatcaaa 145  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  28552092 atagatttgaatcttaaaaattcatatgtaaattgatcaaa 28552052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 95
Target Start/End: Complemental strand, 14465104 - 14465070
Alignment:
Q  61 tcttgaaaattcatatgaaaattgattaaaaggac 95  Q
    |||||||||||||||||||||||||| ||||||||    
T  14465104 tcttgaaaattcatatgaaaattgatcaaaaggac 14465070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 48103965 - 48103929
Alignment:
Q  104 catagatttaaatcttgaaaattcatatgtaaattga 140  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  48103965 catagatttgaatcttcaaaattcatatgtaaattga 48103929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 25993730 - 25993668
Alignment:
Q  96 aatataaccatagatttaaatcttgaaaattcatatgtaaattgatc-aaaggacgaaaatga 157  Q
    |||| ||||||| |||||||| ||| |||||| |||||||||||||| ||| |||||||||||    
T  25993730 aataaaaccatacatttaaatattggaaattcttatgtaaattgatcaaaaagacgaaaatga 25993668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 29981800 - 29981754
Alignment:
Q  96 aatataaccatagatttaaatcttgaaaattcatatgtaaattgatc 142  Q
    |||| ||||||||||||||||||||||||| |||||| | |||||||    
T  29981800 aataaaaccatagatttaaatcttgaaaatccatatgcagattgatc 29981754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 2954146 - 2954101
Alignment:
Q  96 aatataaccatagatttaaatcttgaaaattcatatgtaaattgat 141  Q
    |||| ||||||| |||| ||||||||||||| ||||||||||||||    
T  2954146 aataaaaccataaatttgaatcttgaaaatttatatgtaaattgat 2954101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 25106757 - 25106798
Alignment:
Q  104 catagatttaaatcttgaaaattcatatgtaaattgatcaaa 145  Q
    |||| ||||||||||||||||| |||||| ||||||||||||    
T  25106757 catatatttaaatcttgaaaatccatatgcaaattgatcaaa 25106798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 54153529 - 54153484
Alignment:
Q  96 aatataaccatagatttaaatcttgaaaattcatatgtaaattgat 141  Q
    |||| ||||||| |||| ||||||||||||| ||||||||||||||    
T  54153529 aataaaaccatatatttgaatcttgaaaatttatatgtaaattgat 54153484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 31310694 - 31310658
Alignment:
Q  109 atttaaatcttgaaaattcatatgtaaattgatcaaa 145  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  31310694 atttaaatcttgaaaatacatatgcaaattgatcaaa 31310658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 32558892 - 32558860
Alignment:
Q  109 atttaaatcttgaaaattcatatgtaaattgat 141  Q
    |||||||| ||||||||||||||||||||||||    
T  32558892 atttaaatattgaaaattcatatgtaaattgat 32558860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University