View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18409_low_5 (Length: 401)
Name: NF18409_low_5
Description: NF18409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18409_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 116 - 386
Target Start/End: Original strand, 35381872 - 35382142
Alignment:
| Q |
116 |
gaattcgaagtaaaataatg-tttttgattcggataacctttgatgcatgaagaaacaacaacttagtacacactgtgaactttacattggaaggttccc |
214 |
Q |
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| T |
35381872 |
gaattcgaagtagaatgatgatttttgatttgaataaccat-gatgggtgcagaaacatcagctgaatgcacactgtgaactttatattcgaaggttccc |
35381970 |
T |
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| Q |
215 |
acgattgaagataaaagttgtagatggaagtagcctagctgctgcaactgtgttgaacaacattcccaaagggacaaatcaagtgcttcttcgaggcaag |
314 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35381971 |
acaattgaagataaaagttgtagatggaagtagcctagctgctgcaactgtgttgaacaacattcccaaagggacaaatcaagtgcttcttcgaggcaag |
35382070 |
T |
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| Q |
315 |
ttcaataaggttgcgtttgtcatcgctaatgctttatgcaagaaaaatgtgcaggtgtgtgtgctatatttt |
386 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35382071 |
ttcaataaggttgcgtttgccattgctaatgctttatgcaagaaaaatgtgcaggtatgtgtgctatatttt |
35382142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 117 - 370
Target Start/End: Original strand, 35371883 - 35372137
Alignment:
| Q |
117 |
aattcgaagtaaaataatg-tttttgattcggataacctttgatgcatgaagaaacaacaacttagtacacactgtgaactttacattggaaggttccca |
215 |
Q |
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| T |
35371883 |
aattcgaagtagaataatgattttttatttgaataacctttgatggatgcagaatcatcagcttaatgaacgccatgaacattatattggaaggttacca |
35371982 |
T |
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| Q |
216 |
cgattgaagataaaagttgtagatggaagtagcctagctgctgcaactgtgttgaacaacattcccaaagggacaaatcaagtgcttcttcgaggcaagt |
315 |
Q |
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| T |
35371983 |
caattgaagataaaagttgtagatggaagtagcctagctgctgcaactgtgttgaacaacattcccaaagggacaaatcaagtgcttcttcgaggcaagt |
35372082 |
T |
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| Q |
316 |
tcaataaggttgcgtttgtcatcgctaatgctttatgcaagaaaaatgtgcaggt |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35372083 |
tcaataaggttgcgtttgtcatcgctaatgctttatgcaagaaaaatgtacaggt |
35372137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 116 - 375
Target Start/End: Original strand, 35356659 - 35356918
Alignment:
| Q |
116 |
gaattcgaagtaaaataatg-tttttgattcggataacctttgatgcatgaagaaacaacaacttagtacacactgtgaactttacattggaaggttccc |
214 |
Q |
| |
|
|||||||||||| ||| ||| ||||||||| | |||||| | |||| || ||||||| || || | | |||||||||||||||| ||||||||||| || |
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| T |
35356659 |
gaattcgaagtagaatgatgatttttgatttgaataaccat-gatgggtgcagaaacatcagctgaatgcacactgtgaactttatattggaaggttacc |
35356757 |
T |
|
| Q |
215 |
acgattgaagataaaagttgtagatggaagtagcctagctgctgcaactgtgttgaacaacattcccaaagggacaaatcaagtgcttcttcgaggcaag |
314 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35356758 |
acaattgaagataaaagttgtagatggaagtagcctagctgctgcaactgtgttgaacaacatccccaaagggacaaatcaagtgcttcttcgaggcaag |
35356857 |
T |
|
| Q |
315 |
ttcaataaggttgcgtttgtcatcgctaatgctttatgcaagaaaaatgtgcaggtgtgtg |
375 |
Q |
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||||||||||||||||||| ||| |||||||||||||||| |||||||| ||||| |||| |
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| T |
35356858 |
ttcaataaggttgcgtttgccattgctaatgctttatgcagaaaaaatgtacaggtatgtg |
35356918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 35381717 - 35381797
Alignment:
| Q |
9 |
agcaaaggtgataagtctaggacttttaaatcaggtaacttcacatttttggaacccaactcacctaaactttccaacata |
89 |
Q |
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| T |
35381717 |
agcaaaggtgataagtctaggacttttaaatcaggtaacttcacatttttggaacccaactcacctaaactttccaacata |
35381797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 35355706 - 35355742
Alignment:
| Q |
9 |
agcaaaggtgataagtctaggacttttaaatcaggta |
45 |
Q |
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|||||||||||||||| |||||||||||||||||||| |
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| T |
35355706 |
agcaaaggtgataagtttaggacttttaaatcaggta |
35355742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 375
Target Start/End: Complemental strand, 19628731 - 19628576
Alignment:
| Q |
220 |
tgaagataaaagttgtagatggaagtagcctagctgctgcaactgtgttgaacaacattcccaaagggacaaatcaagtgcttcttcgaggcaagttcaa |
319 |
Q |
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||||||| |||||||||||||| |||||| ||| || ||| |||||| | |||||||||||||||||||| ||||||||||| || | |||||||| || |
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| T |
19628731 |
tgaagattaaagttgtagatggtagtagcttagttgttgctactgtgcttaacaacattcccaaagggaccaatcaagtgctactcaggggcaagtttaa |
19628632 |
T |
|
| Q |
320 |
taaggttgcgtttgtcatcgctaatgctttatgcaagaaaaatgtgcaggtgtgtg |
375 |
Q |
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||||||||| || | ||| |||||||||||||| |||||||| ||||| |||| |
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| T |
19628631 |
taaggttgctttggccattattaatgctttatgcagtaaaaatgtacaggtatgtg |
19628576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 220 - 375
Target Start/End: Original strand, 19685894 - 19686049
Alignment:
| Q |
220 |
tgaagataaaagttgtagatggaagtagcctagctgctgcaactgtgttgaacaacattcccaaagggacaaatcaagtgcttcttcgaggcaagttcaa |
319 |
Q |
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||||||| |||||||||||||| |||||| ||| || ||| |||||| | |||||||||||||| ||||| ||||||||||| || | || ||||| || |
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| T |
19685894 |
tgaagattaaagttgtagatggtagtagcttagttgttgctactgtgcttaacaacattcccaatgggaccaatcaagtgctactcaggggaaagtttaa |
19685993 |
T |
|
| Q |
320 |
taaggttgcgtttgtcatcgctaatgctttatgcaagaaaaatgtgcaggtgtgtg |
375 |
Q |
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||||||||| || | ||| ||||||||||||||| |||||||| ||||| |||| |
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| T |
19685994 |
taaggttgctttggccattactaatgctttatgcagtaaaaatgtacaggtatgtg |
19686049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 19685681 - 19685715
Alignment:
| Q |
12 |
aaaggtgataagtctaggacttttaaatcaggtaa |
46 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
19685681 |
aaaggtgataagtctaggacttttaaatcaggtaa |
19685715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 19628954 - 19628915
Alignment:
| Q |
12 |
aaaggtgataagtctaggacttttaaatcaggtaacttca |
51 |
Q |
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||||||||||||||||||||||||||| ||||||| |||| |
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| T |
19628954 |
aaaggtgataagtctaggacttttaaaccaggtaaattca |
19628915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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