View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18409_low_6 (Length: 351)
Name: NF18409_low_6
Description: NF18409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18409_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 12550216 - 12550547
Alignment:
| Q |
1 |
actgtgttggcgtctgagaaatctgaatgaaaaaggtgtgattaaggttaaccctacaatgaagacaacattgatggattgggagcaggtggagactgct |
100 |
Q |
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| T |
12550216 |
actgtgttggcgtctgagaaatctgaatgaaaaaggtgtgattaaggttaaccctacaatgaagacaacattgatggattgggagcaggtggagactgct |
12550315 |
T |
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| Q |
101 |
taatgcttgagagaattatcaatgatgcagaggttggttggtaataacaatgtatccgatgcatgcaaataaaaagaaaatgacaaaagttgtgacacca |
200 |
Q |
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| T |
12550316 |
taatgcttgagagaattatcaatgatgcagaggttggttggtaataacaatgtattcgatgcatgcaaataaaaagaaaatgacaaaagttgtgacacca |
12550415 |
T |
|
| Q |
201 |
ttgatgagaaaacaagcaactcagaatttctttttaaatctttatttaccaaatctttgaatattaaggttggccataaaaatctataccagaaagtaga |
300 |
Q |
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| T |
12550416 |
ttgatgagaaaacaagcaactcagaatttctttttaaatctttatttaccaaatctttgaatattaaggttggccataaaaatctataccagaaagtaga |
12550515 |
T |
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| Q |
301 |
gtgactaattctgaggtctaagatgattaaca |
332 |
Q |
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| T |
12550516 |
gtgactaattctgaggtctaagatgattaaca |
12550547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 9462194 - 9462236
Alignment:
| Q |
273 |
gccataaaaatctataccagaaagtagagtgactaattctgag |
315 |
Q |
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| T |
9462194 |
gccagaaaagtctataccagaaagtagagtgaataattctgag |
9462236 |
T |
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