View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18409_low_9 (Length: 284)

Name: NF18409_low_9
Description: NF18409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18409_low_9
NF18409_low_9
[»] chr6 (13 HSPs)
chr6 (1-217)||(33390153-33390369)
chr6 (1-212)||(33402695-33402906)
chr6 (1-204)||(31566925-31567127)
chr6 (1-211)||(33059644-33059854)
chr6 (1-217)||(33642389-33642601)
chr6 (1-212)||(33360160-33360371)
chr6 (1-203)||(33306567-33306772)
chr6 (1-181)||(9168855-9169034)
chr6 (1-217)||(33412034-33412250)
chr6 (1-181)||(31560628-31560808)
chr6 (5-217)||(33264734-33264946)
chr6 (1-217)||(33273873-33274089)
chr6 (1-204)||(33287623-33287826)
[»] chr2 (1 HSPs)
chr2 (5-181)||(17438647-17438823)
[»] scaffold1749 (1 HSPs)
scaffold1749 (5-152)||(84-231)
[»] scaffold0428 (1 HSPs)
scaffold0428 (5-152)||(8845-8992)
[»] chr4 (3 HSPs)
chr4 (2-156)||(31501940-31502094)
chr4 (2-159)||(31476812-31476972)
chr4 (2-159)||(31496768-31496925)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 33390153 - 33390369
Alignment:
Q  1 tccacaaattcctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33390153 tccacaaattcctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaa 33390252  T
Q  101 acacatgaagaattgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33390253 acacatgaagaattgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataaa 33390352  T
Q  201 attataccatcacgtac 217  Q
    |||||||||||||||||    
T  33390353 attataccatcacgtac 33390369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 33402695 - 33402906
Alignment:
Q  1 tccacaaattcctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaa 100  Q
    ||||||||||| ||||||| |||||||||||||  ||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||    
T  33402695 tccacaaattcttatagcacgaacaccatcaaccaagtccaaaaccaaatgattttttaatgcttctataggagaatcaatcccaactaaatcttttgaa 33402794  T
Q  101 acacatgaagaattgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataac 200  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| ||| ||||||||| |||    
T  33402795 acacatgaagatttgcactccaatatattcattatcttttgaacaatctttttaatctctccagcttgtggcctgaaagttccaaaagttgttcaaaaac 33402894  T
Q  201 attataccatca 212  Q
    |||||| |||||    
T  33402895 attatatcatca 33402906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 31567127 - 31566925
Alignment:
Q  1 tccacaaattcctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaa 100  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||    
T  31567127 tccacaaattcctatagcacgaacaccatcaatcgagtccaaaagcaaatgattttgtaacgcttctataggagaatcaatcccaactaaatcttttgaa 31567028  T
Q  101 acacatgaagaattgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataac 200  Q
    ||||||||||| |||||||||||||||||||||||  ||||| |||||||||||||||| | |  |||||||||||||||| |||| |||||||||||||    
T  31567027 acacatgaagatttgcactccaatatattcattattgtttgagcaatctttttaatctctcaagattgtggcctgaaagtt-aaaaagttgttcaataac 31566929  T
Q  201 atta 204  Q
    ||||    
T  31566928 atta 31566925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 33059644 - 33059854
Alignment:
Q  1 tccacaaattcctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaa 100  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||    
T  33059644 tccacaaattcctatagcacgaacaccatcaactgagttcaaaagcaaatgattttgtaatgcttgtataggagaatcaatcccaactaaatcttttgaa 33059743  T
Q  101 acacatgaagaattgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataac 200  Q
    ||||||||| | ||||| ||||||||||| |||||| |||||||||||| |||||| || | | || |||||||||||||||||||  ||||||| ||||    
T  33059744 acacatgaatatttgcattccaatatattgattatcttttgaacaatctctttaatttctctagctagtggcctgaaagttcaaaaaattgttcagtaac 33059843  T
Q  201 attataccatc 211  Q
    |||||| ||||    
T  33059844 attatatcatc 33059854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 33642601 - 33642389
Alignment:
Q  1 tccacaaattcctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaa 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||    
T  33642601 tccacaaattcctatagcacgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttttataggagaatcaatcccaactaaatcttttgaa 33642502  T
Q  101 acacatgaagaattgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataac 200  Q
    |||| | |||| |||||||| |||||||| |||||| ||||||||||||||||||||||  || |||||||||||||| |||||    ||||||||||||    
T  33642501 acacttaaagacttgcactctaatatattgattatcttttgaacaatctttttaatctctgcagcttgtggcctgaaa-ttcaa---tttgttcaataac 33642406  T
Q  201 attataccatcacgtac 217  Q
    |||| | ||||||||||    
T  33642405 attaaatcatcacgtac 33642389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 33360160 - 33360371
Alignment:
Q  1 tccacaaattcctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaa 100  Q
    ||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| |||    
T  33360160 tccacaaattcctatagcacgaacaccatcaaccgagttcaaaagcaaatgattttgtaatgcttgtataggagaatcaatctcaactaaatcttttgaa 33360259  T
Q  101 acacatgaagaattgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataac 200  Q
    ||||||||| | ||||| ||||||||||| |||||| ||||||||| || |||||| || | | || ||||||||||||||||||| |||||||||||||    
T  33360260 acacatgaatatttgcattccaatatattgattatcttttgaacaacctctttaatttctctagctagtggcctgaaagttcaaaaagttgttcaataac 33360359  T
Q  201 attataccatca 212  Q
    |||||| |||||    
T  33360360 attatatcatca 33360371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 33306567 - 33306772
Alignment:
Q  1 tccacaaattcctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaa 100  Q
    |||| ||||||||||||||  ||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||    
T  33306567 tccagaaattcctatagcacaaacacaatcaaccgagtccaaaagcaaatgattttttaatgcttctataggagaatcaatcccaactaaatcttttgaa 33306666  T
Q  101 acacatgaagaattgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaa---agttcaaaatgttgttcaat 197  Q
    | | ||||||| ||||||||||||||| |||||||| |||||||||||||||||||| | ||| |||||||||||||   ||||||||| ||||||||||    
T  33306667 atatatgaagatttgcactccaatatactcattatcttttgaacaatctttttaatcactccagcttgtggcctgaaattagttcaaaaagttgttcaat 33306766  T
Q  198 aacatt 203  Q
    ||||||    
T  33306767 aacatt 33306772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 9168855 - 9169034
Alignment:
Q  1 tccacaaattcctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaa 100  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||    
T  9168855 tccacaaattcctatagcacgaacaccatcaattgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcccaactaaatcttttgaa 9168954  T
Q  101 acacatgaagaattgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagtt 181  Q
    ||||||||||| ||||||||| |||| ||||||||| |||| |||||||||||| ||||| ||  ||||||||||||||||    
T  9168955 acacatgaagatttgcactcc-atatgttcattatcttttgtacaatctttttagtctcagcagattgtggcctgaaagtt 9169034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 33412034 - 33412250
Alignment:
Q  1 tccacaaattcctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaa 100  Q
    |||||||||||| ||||||  |||||||||||| ||||||||||| ||||||||||||||| |||||||  ||||||  ||||| ||||||||||| |||    
T  33412034 tccacaaattccaatagcacaaacaccatcaaccgagtccaaaagtaaatgattttgtaatacttctatccgagaatttatcccaactaaatcttttgaa 33412133  T
Q  101 acacatgaagaattgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataac 200  Q
    |   ||||||| || || |||||||||||||||||  |||||||||||||||||||||| ||| ||||||||||||||||||| || |||||||||||||    
T  33412134 atgaatgaagatttacaatccaatatattcattatattttgaacaatctttttaatctctccagcttgtggcctgaaagttcagaaagttgttcaataac 33412233  T
Q  201 attataccatcacgtac 217  Q
    |||||| ||||||||||    
T  33412234 attatatcatcacgtac 33412250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 31560808 - 31560628
Alignment:
Q  1 tccacaaattcctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaa 100  Q
    |||||||||||||||| || ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||    
T  31560808 tccacaaattcctataacacgaacaccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcccaactaaatcttttgaa 31560709  T
Q  101 acacatgaagaattgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagtt 181  Q
    ||||||||||| ||| ||| |||||||||||||||| |  ||||||||||||| ||||| | |  ||||||||||||||||    
T  31560708 acacatgaagatttgtacttcaatatattcattatcgtccgaacaatctttttcatctctcgagattgtggcctgaaagtt 31560628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 5 - 217
Target Start/End: Original strand, 33264734 - 33264946
Alignment:
Q  5 caaattcctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacac 104  Q
    ||||||||||||||| |||||||||||||   ||||||||| |||||||||||||||||||||| | ||||||| ||| | ||||| ||||| |||||||    
T  33264734 caaattcctatagcacgaacaccatcaaccatgtccaaaaggaaatgattttgtaatgcttctaaacgagaatctatcgcaactaagtcttttgaaacac 33264833  T
Q  105 atgaagaattgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataacatta 204  Q
    ||||||| ||||| |||||| || |||||||| |||||||||||||||||||||| ||| |||| |||||| ||||||||||  || |||||||| ||||    
T  33264834 atgaagatttgcattccaatgtactcattatcttttgaacaatctttttaatctctccagcttgcggcctgtaagttcaaaaaattattcaataatatta 33264933  T
Q  205 taccatcacgtac 217  Q
    || ||||||||||    
T  33264934 tatcatcacgtac 33264946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 33273873 - 33274089
Alignment:
Q  1 tccacaaattcctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaa 100  Q
    ||||||||||||||||||| ||||||  ||||| ||||||||||| ||||||||||||||| | |||| | ||||||| ||||| ||||||||||| |||    
T  33273873 tccacaaattcctatagcacgaacactgtcaaccgagtccaaaagtaaatgattttgtaatccgtctaaacgagaatctatcccaactaaatcttttgaa 33273972  T
Q  101 acacatgaagaattgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataac 200  Q
    | ||||||||| ||| ||| |||||||||||  ||| |||||||||||||||||||||| ||| |||| |||||| ||||||||||  || ||||||||     
T  33273973 aaacatgaagatttgtacttcaatatattcaagatcgtttgaacaatctttttaatctctccagcttgcggcctgtaagttcaaaaaatttttcaataat 33274072  T
Q  201 attataccatcacgtac 217  Q
    |||||| ||||||||||    
T  33274073 attatatcatcacgtac 33274089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 33287623 - 33287826
Alignment:
Q  1 tccacaaattcctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaa 100  Q
    ||||||||||||||| ||| |||| |||||||| || |||||| |||||||| ||||||| |||||||||||||||| |||| | ||||||||||| |||    
T  33287623 tccacaaattcctattgcacgaactccatcaaccgaatccaaatgcaaatgactttgtaaggcttctataggagaattaatcgcaactaaatcttttgaa 33287722  T
Q  101 acacatgaagaattgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagttcaaaatgttgttcaataac 200  Q
    || |||||||| |||||||||||||||||||||||| | ||||||||| || |||||||  ||  |||||||||| | |||||||| ||||||||||||     
T  33287723 acccatgaagatttgcactccaatatattcattatcgtctgaacaatcattctaatctctgcagattgtggcctggacgttcaaaaagttgttcaataat 33287822  T
Q  201 atta 204  Q
    ||||    
T  33287823 atta 33287826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 17438823 - 17438647
Alignment:
Q  5 caaattcctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacac 104  Q
    ||||||||||||||| ||||||||||||| ||||||||||| |||||||||| ||||||||||||| ||||||  ||||| ||||||||||| |||  ||    
T  17438823 caaattcctatagcacgaacaccatcaaccgagtccaaaagtaaatgattttttaatgcttctatacgagaatttatcccaactaaatcttttgaattac 17438724  T
Q  105 atgaagaattgcactccaatatattcattatcctttgaacaatctttttaatctcaccaacttgtggcctgaaagtt 181  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||  ||  ||||||||||||||||    
T  17438723 atgaagatttgcattccaatatattcattatcttttgaacaatctttttaatctctgcacattgtggcctgaaagtt 17438647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 84 - 231
Alignment:
Q  5 caaattcctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacac 104  Q
    |||||||||||| || ||||||||||||| || | |||||| || |||| || |||||||||| || ||||||  ||||| ||||||||||| |||||      
T  84 caaattcctataacacgaacaccatcaaccgaattcaaaagtaactgatgttttaatgcttctgtacgagaatttatcccaactaaatcttttgaaacga 183  T
Q  105 atgaagaattgcactccaatatattcattatcctttgaacaatctttt 152  Q
    ||||||| ||||||| |||||||||||  ||| |||||||||||||||    
T  184 atgaagatttgcacttcaatatattcaagatcgtttgaacaatctttt 231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 8845 - 8992
Alignment:
Q  5 caaattcctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaacac 104  Q
    |||||||||||| || ||||||||||||| || | |||||| || |||| || |||||||||| || ||||||  ||||| ||||||||||| |||||      
T  8845 caaattcctataacacgaacaccatcaaccgaattcaaaagtaactgatgttttaatgcttctgtacgagaatttatcccaactaaatcttttgaaacga 8944  T
Q  105 atgaagaattgcactccaatatattcattatcctttgaacaatctttt 152  Q
    ||||||| ||||||| |||||||||||  ||| |||||||||||||||    
T  8945 atgaagatttgcacttcaatatattcaagatcgtttgaacaatctttt 8992  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 156
Target Start/End: Complemental strand, 31502094 - 31501940
Alignment:
Q  2 ccacaaattcctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaa 101  Q
    ||||| ||||||| ||| |||||| ||||||| |||||||| || ||| | |||| |||||||| |||| ||||| |||| || ||||  ||||| ||||    
T  31502094 ccacagattcctacagcttgaacatcatcaacagagtccaagagtaaaagtttttctaatgcttgtatatgagaaacaattccaactatgtcttttgaaa 31501995  T
Q  102 cacatgaagaattgcactccaatatattcattatcctttgaacaatctttttaat 156  Q
    ||||||| || ||||| ||||| ||||| ||||||||||| || || ||||||||    
T  31501994 cacatgatgagttgcaatccaaaatatttattatcctttggacgatatttttaat 31501940  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 159
Target Start/End: Complemental strand, 31476972 - 31476812
Alignment:
Q  2 ccacaaattcctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaa 101  Q
    ||||||||||||| | |||||||| ||||||| ||||||||||| ||| | |||| |||| ||| | |||||||||| ||||| |||||||| || |||     
T  31476972 ccacaaattcctacaacatgaacatcatcaacagagtccaaaagtaaaagcttttctaattcttgtctaggagaatccatcccaactaaatcgtttgaag 31476873  T
Q  102 cacatgaagaa---ttgcactccaatatattcattatcctttgaacaatctttttaatctc 159  Q
    ||| ||||||    ||||  ||||| ||| | ||||||| |||||| ||||||||||||||    
T  31476872 cacttgaagataatttgctgtccaaaatagttattatccgttgaactatctttttaatctc 31476812  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 159
Target Start/End: Complemental strand, 31496925 - 31496768
Alignment:
Q  2 ccacaaattcctatagcatgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttctataggagaatcaatccctactaaatctttcgaaa 101  Q
    ||||||||||||||  || || || ||| ||| ||||||||||| ||| | |||| ||||  ||  ||| |||| || ||||| |||||||| || ||||    
T  31496925 ccacaaattcctatgacacgaccatcattaaccgagtccaaaagtaaaagcttttctaatttttgcatatgagagtccatcccaactaaatcatttgaaa 31496826  T
Q  102 cacatgaagaattgcactccaatatattcattatcctttgaacaatctttttaatctc 159  Q
    |||||  ||| ||||| ||||| |||| |||||||||||||||||| |||||||||||    
T  31496825 cacatatagatttgcaatccaaaatatccattatcctttgaacaatttttttaatctc 31496768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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