View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1840_high_1 (Length: 236)
Name: NF1840_high_1
Description: NF1840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1840_high_1 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 38276233 - 38276016
Alignment:
| Q |
18 |
tccaaaacttgacgcctattagcttaagagtttttgaaggataatagtgactttgaaaggaacttatcagtgagtttgagcttcaagtcttgttgatctg |
117 |
Q |
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| T |
38276233 |
tccaaaacttgacgcgtattagctta-gagtttttgaaggataatagtgactttgaaaggaacttatcggtgagtttgagcttcaagtcttgttgatctg |
38276135 |
T |
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| Q |
118 |
actcaatgaatcacgcactggtcttgttgaaggataatagtgacttcttgaaattgtttcnnnnnnnaggggaaaaaattgaatttgatagagttgttga |
217 |
Q |
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| T |
38276134 |
actcaatgaatcgcacactggtcttgttgaaggataatagtgacttcttgaaattgtttctttttttaggggaaaaaattgaatttgatagagttgttga |
38276035 |
T |
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| Q |
218 |
atgttaggcccagcatcct |
236 |
Q |
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| T |
38276034 |
atgttaggcccagcatcct |
38276016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 38273219 - 38273151
Alignment:
| Q |
68 |
ctttgaaaggaacttatcagtgagtttgagcttcaagtcttgttgatctgactcaatgaatcacgcact |
136 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
38273219 |
ctttgaaaggaacttatctgcgagtttgagcttcaagtcttgttgatctgactcaattaatcacacact |
38273151 |
T |
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