View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1840_high_2 (Length: 224)

Name: NF1840_high_2
Description: NF1840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1840_high_2
NF1840_high_2
[»] chr5 (2 HSPs)
chr5 (1-97)||(4286173-4286269)
chr5 (109-208)||(4284576-4284670)
[»] chr1 (1 HSPs)
chr1 (16-78)||(21387149-21387211)


Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 4286269 - 4286173
Alignment:
Q  1 tagcttacttaattatcctcaagttcaatatacccagattgatttttatcaaaaaacttgaatgctctatggaggtgtatattattctcagacgaat 97  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  4286269 tagcttacttaattatcctcaagttcaatataccgagattgatttttatcaaaaaacttgaatgctctatggaggtgtatatcattctcagatgaat 4286173  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 109 - 208
Target Start/End: Complemental strand, 4284670 - 4284576
Alignment:
Q  109 tttcaacaataagaaggtgtattagcnnnnnnncaaaacaaagagtgtactaatagcactactcccaataacaagtttctttacaatttcgcgggcacag 208  Q
    ||||||||||||||||||||||||||        |||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  4284670 tttcaacaataagaaggtgtattagcaaa-----aaaaaaaagagtgtactaatagcactactccaaataacaagtttcttcacaatttcgcgggcacag 4284576  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 21387149 - 21387211
Alignment:
Q  16 tcctcaagttcaatatacccagattgatttttatcaaaaaacttgaatgctctatggaggtgt 78  Q
    ||||||||||||||| |||||||||  |||||||||||||| | ||||||||| |||||||||    
T  21387149 tcctcaagttcaataaacccagattcgtttttatcaaaaaattggaatgctctttggaggtgt 21387211  T

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