View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1840_high_3 (Length: 202)

Name: NF1840_high_3
Description: NF1840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1840_high_3
NF1840_high_3
[»] chr7 (16 HSPs)
chr7 (44-189)||(23859809-23859954)
chr7 (1-105)||(24339670-24339774)
chr7 (1-37)||(7328686-7328722)
chr7 (1-94)||(2334278-2334370)
chr7 (1-38)||(22602704-22602741)
chr7 (1-37)||(15902850-15902886)
chr7 (1-32)||(18213033-18213064)
chr7 (3-58)||(26329356-26329411)
chr7 (2-56)||(6630888-6630942)
chr7 (4-37)||(1433485-1433518)
chr7 (1-37)||(5548704-5548740)
chr7 (1-37)||(8160444-8160480)
chr7 (51-99)||(14729770-14729818)
chr7 (1-37)||(16341524-16341560)
chr7 (1-37)||(17307921-17307957)
chr7 (1-37)||(33384577-33384613)
[»] chr2 (15 HSPs)
chr2 (1-105)||(34784909-34785013)
chr2 (8-99)||(36096308-36096399)
chr2 (1-99)||(35056896-35056994)
chr2 (9-106)||(26769547-26769644)
chr2 (32-104)||(24009343-24009415)
chr2 (1-57)||(4207885-4207940)
chr2 (1-37)||(30527590-30527626)
chr2 (3-99)||(37419773-37419869)
chr2 (12-91)||(41843480-41843553)
chr2 (1-104)||(11223792-11223894)
chr2 (1-64)||(28524454-28524517)
chr2 (1-35)||(44860348-44860382)
chr2 (8-61)||(18054774-18054827)
chr2 (1-106)||(32749751-32749856)
chr2 (1-37)||(12668418-12668454)
[»] chr6 (17 HSPs)
chr6 (8-99)||(18367871-18367962)
chr6 (8-99)||(16488523-16488614)
chr6 (1-99)||(17327594-17327686)
chr6 (1-99)||(16766725-16766823)
chr6 (9-99)||(8365452-8365542)
chr6 (1-35)||(9195751-9195785)
chr6 (1-36)||(7086823-7086858)
chr6 (1-36)||(9025490-9025525)
chr6 (3-106)||(9107296-9107399)
chr6 (12-99)||(10339058-10339145)
chr6 (1-50)||(21395290-21395339)
chr6 (32-105)||(34595182-34595255)
chr6 (1-92)||(9629411-9629502)
chr6 (10-58)||(10294144-10294192)
chr6 (1-37)||(16111752-16111788)
chr6 (1-37)||(26562717-26562753)
chr6 (1-37)||(34073342-34073378)
[»] chr5 (22 HSPs)
chr5 (8-99)||(6401533-6401624)
chr5 (8-99)||(21814296-21814387)
chr5 (11-99)||(19452999-19453087)
chr5 (3-99)||(3966533-3966629)
chr5 (1-99)||(14873545-14873637)
chr5 (1-58)||(11685967-11686023)
chr5 (1-90)||(19579729-19579818)
chr5 (32-99)||(21576689-21576756)
chr5 (1-64)||(41091225-41091288)
chr5 (1-59)||(18592101-18592159)
chr5 (1-35)||(36838571-36838605)
chr5 (1-99)||(39698569-39698667)
chr5 (1-58)||(21542058-21542115)
chr5 (51-99)||(17593667-17593715)
chr5 (1-32)||(16203795-16203826)
chr5 (5-103)||(36642692-36642789)
chr5 (1-58)||(21522778-21522835)
chr5 (1-58)||(21533344-21533401)
chr5 (3-48)||(37328828-37328873)
chr5 (1-37)||(6035510-6035546)
chr5 (1-37)||(24037750-24037786)
chr5 (54-94)||(32426834-32426874)
[»] chr1 (19 HSPs)
chr1 (8-99)||(25934651-25934742)
chr1 (1-105)||(5944311-5944415)
chr1 (1-99)||(47989525-47989623)
chr1 (1-99)||(9828072-9828170)
chr1 (1-53)||(44482258-44482310)
chr1 (12-99)||(6414935-6415021)
chr1 (16-91)||(41597422-41597497)
chr1 (1-58)||(9629874-9629931)
chr1 (9-94)||(34315748-34315833)
chr1 (1-58)||(34371741-34371798)
chr1 (1-37)||(34712378-34712414)
chr1 (3-99)||(40917779-40917875)
chr1 (1-91)||(1486656-1486740)
chr1 (1-48)||(5376484-5376531)
chr1 (1-48)||(6612155-6612202)
chr1 (1-48)||(25361914-25361961)
chr1 (1-32)||(39130767-39130798)
chr1 (1-35)||(25272510-25272544)
chr1 (42-99)||(10577679-10577736)
[»] chr8 (18 HSPs)
chr8 (1-104)||(26902103-26902206)
chr8 (8-99)||(34450965-34451061)
chr8 (1-99)||(15816062-15816160)
chr8 (1-91)||(18964205-18964297)
chr8 (12-112)||(22652015-22652115)
chr8 (1-58)||(2572030-2572087)
chr8 (1-105)||(29447472-29447576)
chr8 (1-104)||(11927014-11927117)
chr8 (1-91)||(16641921-16642005)
chr8 (5-48)||(25172682-25172725)
chr8 (1-32)||(33405384-33405415)
chr8 (1-35)||(16867202-16867236)
chr8 (1-58)||(24362175-24362233)
chr8 (42-99)||(3025609-3025666)
chr8 (1-46)||(14634127-14634172)
chr8 (8-40)||(11944700-11944732)
chr8 (1-37)||(12402686-12402722)
chr8 (3-99)||(29510237-29510333)
[»] scaffold0623 (1 HSPs)
scaffold0623 (8-94)||(5934-6020)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-105)||(241622-241726)
[»] chr4 (11 HSPs)
chr4 (8-99)||(5414105-5414196)
chr4 (1-92)||(46083931-46084022)
chr4 (8-99)||(30982811-30982902)
chr4 (1-55)||(13134478-13134532)
chr4 (1-58)||(22234864-22234921)
chr4 (1-94)||(30838238-30838331)
chr4 (32-92)||(49431074-49431134)
chr4 (5-54)||(19500836-19500885)
chr4 (1-37)||(5775353-5775389)
chr4 (1-37)||(40742619-40742655)
chr4 (1-37)||(46160924-46160960)
[»] chr3 (13 HSPs)
chr3 (32-99)||(35222986-35223053)
chr3 (1-99)||(4987224-4987322)
chr3 (1-90)||(25064937-25065024)
chr3 (3-59)||(11665974-11666030)
chr3 (3-99)||(34185056-34185152)
chr3 (1-88)||(8039779-8039866)
chr3 (9-112)||(41961570-41961673)
chr3 (32-99)||(13845469-13845536)
chr3 (1-35)||(15314873-15314907)
chr3 (1-37)||(11313795-11313831)
chr3 (1-57)||(14209141-14209197)
chr3 (1-105)||(16789040-16789143)
chr3 (8-36)||(25211574-25211602)
[»] scaffold0036 (1 HSPs)
scaffold0036 (2-99)||(9680-9777)
[»] scaffold0123 (1 HSPs)
scaffold0123 (1-58)||(44499-44556)
[»] scaffold0044 (1 HSPs)
scaffold0044 (1-94)||(53208-53301)
[»] scaffold0236 (1 HSPs)
scaffold0236 (1-35)||(25765-25799)
[»] scaffold0039 (1 HSPs)
scaffold0039 (9-58)||(84947-84996)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-94)||(263310-263403)
[»] scaffold0171 (1 HSPs)
scaffold0171 (1-37)||(23448-23484)
[»] scaffold0019 (1 HSPs)
scaffold0019 (3-91)||(71755-71843)


Alignment Details
Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 44 - 189
Target Start/End: Complemental strand, 23859954 - 23859809
Alignment:
Q  44 gacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttcgtagatgtaaagttaaaatatatgcacattgattccctttgcac 143  Q
    ||||| ||||||||||||||  ||||||  | ||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  23859954 gacacgacacgtgtctaacaaagtgacataccttatctgaggagtgtccgtgcttcatagatgtaaagttaaaatatatgcacattgattccctttgcac 23859855  T
Q  144 aaagtatcaagaatcttgacattctaatccttgagaagcatatctt 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  23859854 aaagtatcaagaatcttgacattctaatccttgagaagcatatctt 23859809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 24339670 - 24339774
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttcg 100  Q
    |||||| |||||||||| | ||||||||||||||||| || ||||||| |||||| ||  |||| | ||||||| | |||||||||||| |||| ||||     
T  24339670 ataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtatccgacaccgggacacgcctaatccgaggagtgcccgtgcttca 24339769  T
Q  101 tagat 105  Q
    |||||    
T  24339770 tagat 24339774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 7328722 - 7328686
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  7328722 ataatttagtgtaattatatgtgtcggtgtcgtgtcg 7328686  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 2334278 - 2334370
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgt 94  Q
    ||||||||||||||||| | ||||||||||||||||| || ||||||| |||| ||||  |||| |  |||||  | |||||||||||||||||    
T  2334278 ataatttagtgtaattacaagtgtcggtgtcgtgtcg-tgtcggacacgacacatgtccgacactgaaacacgtctaatccgaggagtgtccgt 2334370  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22602741 - 22602704
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcga 38  Q
    |||||| |||||||||||||||||||||||||||||||    
T  22602741 ataattcagtgtaattatatgtgtcggtgtcgtgtcga 22602704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15902850 - 15902886
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcg 37  Q
    |||||||||||||||||||||||||||||| ||||||    
T  15902850 ataatttagtgtaattatatgtgtcggtgttgtgtcg 15902886  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 18213064 - 18213033
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcg 32  Q
    ||||||||||||||||||||||||||||||||    
T  18213064 ataatttagtgtaattatatgtgtcggtgtcg 18213033  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 26329411 - 26329356
Alignment:
Q  3 aatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtc 58  Q
    |||| |||||||||||||||||||| ||||||||| || | ||||| |||||||||    
T  26329411 aattcagtgtaattatatgtgtcggcgtcgtgtcggtgtcagacacgacacgtgtc 26329356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 6630942 - 6630888
Alignment:
Q  2 taatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtg 56  Q
    ||||| ||||||||||||||||||| |||||||| | || ||||||| |||||||    
T  6630942 taattcagtgtaattatatgtgtcgatgtcgtgttggtgtcggacacaacacgtg 6630888  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 1433485 - 1433518
Alignment:
Q  4 atttagtgtaattatatgtgtcggtgtcgtgtcg 37  Q
    |||| |||||||||||||||||||||||||||||    
T  1433485 atttggtgtaattatatgtgtcggtgtcgtgtcg 1433518  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5548704 - 5548740
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcg 37  Q
    |||||| |||||||||||||||||| |||||||||||    
T  5548704 ataattcagtgtaattatatgtgtcagtgtcgtgtcg 5548740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8160444 - 8160480
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcg 37  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  8160444 ataatttagtgtaattatatgtgttggtatcgtgtcg 8160480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 14729770 - 14729818
Alignment:
Q  51 cacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    ||||||||  |||| | ||||||||| ||||||||||||||||||||||    
T  14729770 cacgtgtccgacaccgggacacgcttaatccgaggagtgtccgtacttc 14729818  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 16341524 - 16341560
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcg 37  Q
    |||||| |||||||||||||||| |||||||||||||    
T  16341524 ataattaagtgtaattatatgtgccggtgtcgtgtcg 16341560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17307921 - 17307957
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcg 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  17307921 ataattcagtgtaattatatgtgttggtgtcgtgtcg 17307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33384613 - 33384577
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcg 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  33384613 ataatttagtgtaattatatgtgttggtgtggtgtcg 33384577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 5e-24; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 34785013 - 34784909
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttcg 100  Q
    ||||||||||||||||||||||||||||||||||||| |  ||||||| |||| ||||| |||||| ||||||| |||| ||||||||||| || ||||     
T  34785013 ataatttagtgtaattatatgtgtcggtgtcgtgtcggtatcggacacgacacctgtctgacacggggacacgccttattcgaggagtgtctgtgcttca 34784914  T
Q  101 tagat 105  Q
    |||||    
T  34784913 tagat 34784909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 36096399 - 36096308
Alignment:
Q  8 agtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    ||||||||||||| ||||||||||||||||||| ||||||| |||||||||| |||||| ||||||| ||| || | |||||||||| ||||    
T  36096399 agtgtaattatatttgtcggtgtcgtgtcgatgtcggacacgacacgtgtctgacacggggacacgccttaaccaaagagtgtccgtgcttc 36096308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 35056896 - 35056994
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    |||||| |||||||||||||||||||||||||||||| || ||||||| |||||||||  ||||||  |||||| | ||| ||||||||||||| ||||    
T  35056896 ataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgcttc 35056994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 26769547 - 26769644
Alignment:
Q  9 gtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttcgtagatg 106  Q
    ||||||||| | ||||||||||| ||||| |  ||||||| |||||||||  |||| | ||||||| | ||||||||||||||||| |||| ||||||    
T  26769547 gtgtaattacaagtgtcggtgtcatgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcatagatg 26769644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 24009343 - 24009415
Alignment:
Q  32 gtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttcgtaga 104  Q
    |||||| || ||||||| |||||||||| |||||| ||||||| |||||| |||||||||||| |||| ||||    
T  24009343 gtgtcggtgtcggacacgacacgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcataga 24009415  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 4207885 - 4207940
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgt 57  Q
    |||||||||||||||||||| ||||||| |||||||| || ||||||| ||||||||    
T  4207885 ataatttagtgtaattatat-tgtcggtatcgtgtcggtgtcggacacgacacgtgt 4207940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30527626 - 30527590
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcg 37  Q
    |||||||||||||||||||||||||||| ||||||||    
T  30527626 ataatttagtgtaattatatgtgtcggtatcgtgtcg 30527590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 37419773 - 37419869
Alignment:
Q  3 aatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    |||| |||||||||| | ||| ||||||||||||| || ||||||| |  ||||||  |||| | ||||||| | ||||||||||||||||| ||||    
T  37419773 aattcagtgtaattacaagtgccggtgtcgtgtcggtgtcggacacgatgcgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttc 37419869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 41843480 - 41843553
Alignment:
Q  12 taattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtc 91  Q
    ||||||||||||||||||| ||||||      ||| | |||||||||  |||||| ||||||||||||||||||||||||    
T  41843480 taattatatgtgtcggtgttgtgtcg------gacgcgacacgtgtccgacacggggacacgctttatccgaggagtgtc 41843553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 11223894 - 11223792
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttcg 100  Q
    |||||| |||||||||| | ||||||||||| ||| | || ||||||| |||| ||||| |||| | ||||||| | ||| ||||||||||||| ||||     
T  11223894 ataattcagtgtaattacaagtgtcggtgtcatgtaggtgtcggacacgacac-tgtctgacaccgggacacgcctaatctgaggagtgtccgtgcttca 11223796  T
Q  101 taga 104  Q
    ||||    
T  11223795 taga 11223792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 28524454 - 28524517
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacac 64  Q
    |||||| ||||||||||||||||||| ||| |||| | || ||||||| |||||||||| ||||    
T  28524454 ataattcagtgtaattatatgtgtcgttgttgtgttggtgtcggacacaacacgtgtctgacac 28524517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 44860348 - 44860382
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgt 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  44860348 ataattcagtgtaattatatgtgtcggtgtcgtgt 44860382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 18054827 - 18054774
Alignment:
Q  8 agtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaa 61  Q
    ||||||||||||||||| |||||||||||| || || |||| || |||||||||    
T  18054827 agtgtaattatatgtgttggtgtcgtgtcggtgtcgaacacgacgcgtgtctaa 18054774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 32749856 - 32749751
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttcg 100  Q
    |||||| |||||||| ||| ||||| |||||||||||||| |||||   ||| |||||  |||| | ||||||| |||||  |||||||||||  ||||     
T  32749856 ataattcagtgtaataataagtgtcagtgtcgtgtcgatgtcggacgtgacatgtgtccgacactgggacacgccttatctaaggagtgtccgcgcttca 32749757  T
Q  101 tagatg 106  Q
    ||||||    
T  32749756 tagatg 32749751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12668454 - 12668418
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcg 37  Q
    |||||| |||||||||||| |||||||||||||||||    
T  12668454 ataattcagtgtaattataagtgtcggtgtcgtgtcg 12668418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 5e-21; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 18367871 - 18367962
Alignment:
Q  8 agtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    |||||||||||||||||||||||||||||| || | ||||| |||| ||||| |||||| ||||||| |||||| |||||||||||| ||||    
T  18367871 agtgtaattatatgtgtcggtgtcgtgtcggtgtcagacacgacacatgtctgacacggggacacgccttatccaaggagtgtccgtgcttc 18367962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 16488614 - 16488523
Alignment:
Q  8 agtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    |||||||||||||||||||||||||||||| || ||||||| ||||||||||  ||||| ||||||| |||||| |||| ||| ||| ||||    
T  16488614 agtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtctggcacggggacacgccttatccaaggaatgttcgtgcttc 16488523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 17327686 - 17327594
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    |||||||||||||| |||||||||| |||||||||||      ||||| |||||||||| |||| | ||||||| | ||||||||||||||||| ||||    
T  17327686 ataatttagtgtaactatatgtgtcagtgtcgtgtcg------gacacgacacgtgtctgacacagggacacgcctaatccgaggagtgtccgtgcttc 17327594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 16766725 - 16766823
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    |||||| |||||||||| | ||||||||||||||||| || ||||||| |||||||||  |||| | ||||||| | |||||| || ||||||| ||||    
T  16766725 ataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgaagaatgtccgtgcttc 16766823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 8365542 - 8365452
Alignment:
Q  9 gtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    ||||||||| | ||||||||||||||||| |  ||||||| |||||||||  |||| | ||||||| | ||||||||||| ||||| ||||    
T  8365542 gtgtaattacaagtgtcggtgtcgtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtctccgtgcttc 8365452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 9195785 - 9195751
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  9195785 ataatttagtgtaattatatgtgtcggtgtcgtgt 9195751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 7086823 - 7086858
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtc 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  7086823 ataatttagtgtaattatatgtgtcggtgtagtgtc 7086858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9025525 - 9025490
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtc 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  9025525 ataattcagtgtaattatatgtgtcggtgtcgtgtc 9025490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 9107399 - 9107296
Alignment:
Q  3 aatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttcgta 102  Q
    |||| |||||||||| | ||||||||||||||||| || ||||||| ||  |||||  |||| | ||||| | | |||||||||||| |||| |||| ||    
T  9107399 aattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaacgtgtgtccgacaccgggacacacctaatccgaggagtgcccgtgcttcata 9107300  T
Q  103 gatg 106  Q
    ||||    
T  9107299 gatg 9107296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 10339145 - 10339058
Alignment:
Q  12 taattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    |||||||||||||| ||| ||||||| || ||||||| |||| ||||  |||| | ||||||| | ||| ||||||||||||| ||||    
T  10339145 taattatatgtgtcagtgccgtgtcggtgtcggacacgacacatgtccgacactgggacacgcctaatcggaggagtgtccgtgcttc 10339058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 21395339 - 21395290
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacacca 50  Q
    ||||||||||||||||| | ||||||||||||||||  || |||||||||    
T  21395339 ataatttagtgtaattacaagtgtcggtgtcgtgtcagtgtcggacacca 21395290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 34595182 - 34595255
Alignment:
Q  32 gtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttcgtagat 105  Q
    |||||| || ||||||| |||||||||| |||| | ||||| | | ||||||||||||||||| |||| |||||    
T  34595182 gtgtcggtgtcggacacgacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttcatagat 34595255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 9629411 - 9629502
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtc-gtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtcc 92  Q
    |||||| | |||||||||||||||||||||| |||||| || ||||||| ||| |||||  |||| | ||||||  | |||||||||||||||    
T  9629411 ataattcaatgtaattatatgtgtcggtgtcggtgtcg-tgtcggacacaacatgtgtccgacactgagacacgtctaatccgaggagtgtcc 9629502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 10294144 - 10294192
Alignment:
Q  10 tgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtc 58  Q
    |||||||||||||||||||||||||| | || ||||||| ||| |||||    
T  10294144 tgtaattatatgtgtcggtgtcgtgttggtgtcggacacgacatgtgtc 10294192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16111788 - 16111752
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcg 37  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  16111788 ataatttagtgtaattataggtgtcagtgtcgtgtcg 16111752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26562717 - 26562753
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcg 37  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  26562717 ataattcagtgtaattatatgtgtcgatgtcgtgtcg 26562753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34073378 - 34073342
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcg 37  Q
    |||||| |||||||||||||| |||||||||||||||    
T  34073378 ataattcagtgtaattatatgggtcggtgtcgtgtcg 34073342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 6401533 - 6401624
Alignment:
Q  8 agtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    |||||||||||||||||||||||||||||  || ||||||| |||||||||| |||||| || |||| |||||| |||||||||||| ||||    
T  6401533 agtgtaattatatgtgtcggtgtcgtgtcagtgtcggacacgacacgtgtctgacacggggatacgccttatccaaggagtgtccgtgcttc 6401624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 21814296 - 21814387
Alignment:
Q  8 agtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    |||||||||||||||||||||||||||||| || ||||||| ||||||||||  ||||| ||||||| |||||| |||| ||| ||| ||||    
T  21814296 agtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtctggcacggggacacgccttatccaaggaatgttcgtgcttc 21814387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 19453087 - 19452999
Alignment:
Q  11 gtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    |||||||||||||||||||||||||| ||| ||||||| |||| ||||| |||||| || |||| |||||| ||||| |||||| ||||    
T  19453087 gtaattatatgtgtcggtgtcgtgtcaatgtcggacacgacacatgtctcacacggagatacgccttatccaaggagcgtccgtgcttc 19452999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 3966533 - 3966629
Alignment:
Q  3 aatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    |||| |||||||||||||||||||||||||||||  || ||||||| ||| ||||| ||||  | ||||||  | ||||||||||||||||| ||||    
T  3966533 aattcagtgtaattatatgtgtcggtgtcgtgtcagtgtcggacacaacatgtgtccaacagagggacacgtctaatccgaggagtgtccgtgcttc 3966629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 14873545 - 14873637
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    |||||||||||||||||||||||||||||||      ||| ||||| | ||||||||| ||||| | ||||||| | ||||||||||||||||| ||||    
T  14873545 ataatttagtgtaattatatgtgtcggtgtc------atgtcggacgcaacacgtgtccaacaccgggacacgcctaatccgaggagtgtccgtgcttc 14873637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 11685967 - 11686023
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtc 58  Q
    ||||||||||||||||||||||||||||||||| ||| || ||||||| |||||||||    
T  11685967 ataatttagtgtaattatatgtgtcggtgtcgt-tcggtgtcggacacgacacgtgtc 11686023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 19579729 - 19579818
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgt 90  Q
    ||||||||||| ||||| | ||||||||||||||||  || ||||||| |||  |||||||||| | ||||||| | |||||||||||||    
T  19579729 ataatttagtgcaattacaagtgtcggtgtcgtgtcagtgtcggacacgacatatgtctaacaccgggacacgcctaatccgaggagtgt 19579818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 21576756 - 21576689
Alignment:
Q  32 gtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    ||||||||| ||||||| |||||||||| |||| | ||||||| | ||||||||||||||||| ||||    
T  21576756 gtgtcgatgtcggacacgacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttc 21576689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 41091288 - 41091225
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacac 64  Q
    |||||| ||||||||||||||||||| ||||||||| ||| ||||| | ||| |||||||||||    
T  41091288 ataattcagtgtaattatatgtgtcgatgtcgtgtcaatgtcggacgcgacatgtgtctaacac 41091225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 18592101 - 18592159
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtct 59  Q
    |||||| | |||||||||||||| ||||||||||||| || ||||||| ||||||||||    
T  18592101 ataattcaatgtaattatatgtgccggtgtcgtgtcggtgtcggacacaacacgtgtct 18592159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 36838571 - 36838605
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  36838571 ataatttagtgtaattatatgtgtcggtgtcgtgt 36838605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 39698569 - 39698667
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    |||||| |||||||||| | ||||| ||||||||||| || ||||||| ||| || ||  |||| | ||||||| | ||||||||||||||||| ||||    
T  39698569 ataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggacacgacatgtatccgacaccgagacacgcctaatccgaggagtgtccgtgcttc 39698667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 21542058 - 21542115
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtc 58  Q
    |||||| |||||||||| | ||||||||||||||||| || ||||||| |||||||||    
T  21542058 ataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtgtc 21542115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 17593715 - 17593667
Alignment:
Q  51 cacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    |||||||| ||||| | ||||||||| ||||||||||||||||||||||    
T  17593715 cacgtgtccaacaccgggacacgcttaatccgaggagtgtccgtacttc 17593667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 16203826 - 16203795
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcg 32  Q
    ||||||||||||||||||||||||||||||||    
T  16203826 ataatttagtgtaattatatgtgtcggtgtcg 16203795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 36642789 - 36642692
Alignment:
Q  5 tttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttcgtag 103  Q
    |||||||||| |||| ||||||||||| ||| | || ||||||| |||||||||  |||||| ||||||| | ||  |||||||||| || ||||||||    
T  36642789 tttagtgtaaatataagtgtcggtgtcatgttggtgtcggacacgacacgtgtccgacacgg-gacacgcctaattggaggagtgtcggtgcttcgtag 36642692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 21522778 - 21522835
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtc 58  Q
    |||||| |||||||||| |  |||||||||||||||| || ||||||| |||||||||    
T  21522778 ataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacacgacacgtgtc 21522835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 21533344 - 21533401
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtc 58  Q
    |||||| |||||||||| |  |||||||||||||||| || ||||||| |||||||||    
T  21533344 ataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacacgacacgtgtc 21533401  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 37328873 - 37328828
Alignment:
Q  3 aatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacac 48  Q
    |||| |||||||||| ||||||||||||||||||| || |||||||    
T  37328873 aattcagtgtaattacatgtgtcggtgtcgtgtcggtgtcggacac 37328828  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6035510 - 6035546
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcg 37  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  6035510 ataattcagtgtaattatatttgtcggtgtcgtgtcg 6035546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24037786 - 24037750
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcg 37  Q
    |||||||||| || |||||||||||||||||||||||    
T  24037786 ataatttagtatacttatatgtgtcggtgtcgtgtcg 24037750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 32426874 - 32426834
Alignment:
Q  54 gtgtctaacacggtgacacgctttatccgaggagtgtccgt 94  Q
    ||||||||||||| || |||| |||||||||||||||||||    
T  32426874 gtgtctaacacggggatacgccttatccgaggagtgtccgt 32426834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 25934651 - 25934742
Alignment:
Q  8 agtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    ||||||||||||||||||||| |||||||| || ||||||| |||||||||| |||||| || |||| |||||| |||||||||||| ||||    
T  25934651 agtgtaattatatgtgtcggtatcgtgtcggtgtcggacacgacacgtgtctgacacggggatacgccttatccaaggagtgtccgtgcttc 25934742  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 5944311 - 5944415
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttcg 100  Q
    |||||| |||||||||||| |||||||||||||||||||| ||||||| |||| ||||  |||| | || |||| | ||||||||||||| ||| ||||     
T  5944311 ataattcagtgtaattataagtgtcggtgtcgtgtcgatgacggacacaacacatgtccgacaccgggatacgcctaatccgaggagtgttcgtgcttca 5944410  T
Q  101 tagat 105  Q
    |||||    
T  5944411 tagat 5944415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 47989525 - 47989623
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    |||||| |||||||||| | ||||||||||||||||| || ||||||| |||| ||||| |||  | ||||||| | ||||||||||||||||| ||||    
T  47989525 ataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacatgtctgacatcgggacacgcctaatccgaggagtgtccgtgcttc 47989623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 9828072 - 9828170
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    |||||| ||||||||| |||||||||||||||||||  || | ||||| |||||||||  |||| | ||||||  | ||||||||||||||||| ||||    
T  9828072 ataattcagtgtaattttatgtgtcggtgtcgtgtccgtgtcagacacgacacgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttc 9828170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 44482258 - 44482310
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacac 53  Q
    |||||| |||||||||||||||||||||||||||||| || ||||||| ||||    
T  44482258 ataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacac 44482310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 6415021 - 6414935
Alignment:
Q  12 taattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    |||||| ||||||||||||| | |||||| ||||||| |||||||||| |||| | |||||  || ||||||||||||||||| ||||    
T  6415021 taattagatgtgtcggtgtcat-tcgatgtcggacacgacacgtgtctgacaccgcgacacatttcatccgaggagtgtccgtgcttc 6414935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 41597497 - 41597422
Alignment:
Q  16 tatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtc 91  Q
    ||||||||| ||||| |||||  || ||||||| |||||||||| |||||| || ||||||||||| |||||||||    
T  41597497 tatatgtgttggtgttgtgtccgtgtcggacacgacacgtgtctgacacggggatacgctttatccaaggagtgtc 41597422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 9629931 - 9629874
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtc 58  Q
    |||||| ||||| |||||| |||||||||||||||||||| ||||||| |||| ||||    
T  9629931 ataattcagtgtgattataagtgtcggtgtcgtgtcgatgtcggacacgacacatgtc 9629874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 34315748 - 34315833
Alignment:
Q  9 gtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgt 94  Q
    |||||||||||||||||||| |||| ||| || || |||| |||| ||||||| ||| |||||||  ||||| ||||||| |||||    
T  34315748 gtgtaattatatgtgtcggtatcgtatcggtgtcgaacacgacacatgtctaatacgttgacacgtcttatctgaggagtctccgt 34315833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 34371741 - 34371798
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtc 58  Q
    |||||| |||||||||||||||||||||||||||| | || |||| || |||||||||    
T  34371741 ataattcagtgtaattatatgtgtcggtgtcgtgttggtgtcggatacgacacgtgtc 34371798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34712414 - 34712378
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcg 37  Q
    ||||||||||||||||||||||||| |||||||||||    
T  34712414 ataatttagtgtaattatatgtgtcagtgtcgtgtcg 34712378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 40917779 - 40917875
Alignment:
Q  3 aatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    |||| |||||||||| | || |||||||||||||| ||  |||||| |||||||||  |||| | ||||||| | ||||||||| ||||||| ||||    
T  40917779 aattaagtgtaattacaagtctcggtgtcgtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttc 40917875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 1486740 - 1486656
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtc 91  Q
    |||||| |||||||||||| |||||||||||||||      ||||||| |||||||||  |||| | ||||||| | ||||||||||||||    
T  1486740 ataattcagtgtaattataagtgtcggtgtcgtgt------cggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtc 1486656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 5376531 - 5376484
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacac 48  Q
    |||||| |||||||||| | |||||||||||||||||||| |||||||    
T  5376531 ataattcagtgtaattaaaagtgtcggtgtcgtgtcgatgtcggacac 5376484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 6612202 - 6612155
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacac 48  Q
    |||||| |||||||||| | |||||||||||||||||||| |||||||    
T  6612202 ataattcagtgtaattacaagtgtcggtgtcgtgtcgatgtcggacac 6612155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 25361914 - 25361961
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacac 48  Q
    |||||| |||||||||||||||||| ||||||||||| || |||||||    
T  25361914 ataattcagtgtaattatatgtgtcagtgtcgtgtcggtgtcggacac 25361961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 39130798 - 39130767
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcg 32  Q
    ||||||||||||||||||||||||||||||||    
T  39130798 ataatttagtgtaattatatgtgtcggtgtcg 39130767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 25272510 - 25272544
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgt 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  25272510 ataatttagtgtaattataagtgtcggtgtcgtgt 25272544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 10577736 - 10577679
Alignment:
Q  42 cggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    ||||||| || ||||||| |||||| ||||||| |||||| |||||||||||| ||||    
T  10577736 cggacacgacgcgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttc 10577679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 26902206 - 26902103
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttcg 100  Q
    |||||| |||||||||||||||||||||||||| |   || ||||||| ||||||||||  ||||| ||||||| ||||| ||||||||||||| ||||     
T  26902206 ataattcagtgtaattatatgtgtcggtgtcgtatgagtgtcggacacgacacgtgtctggcacggggacacgccttatctgaggagtgtccgtgcttca 26902107  T
Q  101 taga 104  Q
    ||||    
T  26902106 taga 26902103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 34451061 - 34450965
Alignment:
Q  8 agtgtaattatatgtgtcggtgtcgtgtcga-----tgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    ||||||||||||||||||||||||||||||      || ||||||| |||||||||| |||||| ||||||| |||||| |||||||||||| ||||    
T  34451061 agtgtaattatatgtgtcggtgtcgtgtcgtgtcggtgtcggacacgacacgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttc 34450965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 15816160 - 15816062
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    ||||||||||||||||||| ||||||||||||||| | || ||||||| |||||  ||  |||| | ||||||| | ||||||| ||||||||| ||||    
T  15816160 ataatttagtgtaattataagtgtcggtgtcgtgttggtgtcggacacgacacgaatccgacaccgggacacgcctaatccgagaagtgtccgtgcttc 15816062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 18964205 - 18964297
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgt--cgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtc 91  Q
    |||||| | |||||||||||||||||||||  |||||||  |  | |||| |||| |||||||||||| ||||||| ||||||||||||||||    
T  18964205 ataattcaatgtaattatatgtgtcggtgtgtcgtgtcggcgttgaacacgacacctgtctaacacggagacacgccttatccgaggagtgtc 18964297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 22652015 - 22652115
Alignment:
Q  12 taattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttcgtagatgtaaag 111  Q
    |||||| | ||||||||||||||||| || ||||||| ||| |||||  |||| | ||||||  | ||||||||||||||||| |||| ||| |||||||    
T  22652015 taattacaagtgtcggtgtcgtgtcggtgtcggacacgacatgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatagctgtaaag 22652114  T
Q  112 t 112  Q
    |    
T  22652115 t 22652115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 2572087 - 2572030
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtc 58  Q
    ||||||||||||||||| | ||||||||||||||||  || ||||||| |||||||||    
T  2572087 ataatttagtgtaattacaagtgtcggtgtcgtgtctgtgtcggacacgacacgtgtc 2572030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 29447472 - 29447576
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttcg 100  Q
    |||||| ||||||||||||||||| |||||||||||| || | ||||| ||| |||||  |||| | |||| |  | ||| ||||||||||||| ||||     
T  29447472 ataattaagtgtaattatatgtgttggtgtcgtgtcggtgtcagacacgacatgtgtccgacaccgggacaggtctaatcggaggagtgtccgtgcttca 29447571  T
Q  101 tagat 105  Q
    |||||    
T  29447572 tagat 29447576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 11927117 - 11927014
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttcg 100  Q
    |||||| |||||||||||||||||||||||||||| | || |  |||| ||| || || ||||  | ||||||| | |||||| |||||||||| ||||     
T  11927117 ataattcagtgtaattatatgtgtcggtgtcgtgttggtgtcatacacgacatgtatccaacatcgagacacgcctaatccgatgagtgtccgtgcttca 11927018  T
Q  101 taga 104  Q
    ||||    
T  11927017 taga 11927014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 16642005 - 16641921
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtc 91  Q
    ||||||||||||  |||||||||||||||||||||      ||||||| ||| ||||||||||| | ||||| | | ||||||||||||||    
T  16642005 ataatttagtgtcgttatatgtgtcggtgtcgtgt------cggacacgacatgtgtctaacaccgggacacacctaatccgaggagtgtc 16641921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 25172725 - 25172682
Alignment:
Q  5 tttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacac 48  Q
    |||| ||||||||||||||||||||||||||| ||| |||||||    
T  25172725 tttaatgtaattatatgtgtcggtgtcgtgtcaatgtcggacac 25172682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 33405415 - 33405384
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcg 32  Q
    ||||||||||||||||||||||||||||||||    
T  33405415 ataatttagtgtaattatatgtgtcggtgtcg 33405384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 16867236 - 16867202
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgt 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  16867236 ataatttagtgtaattataagtgtcggtgtcgtgt 16867202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 24362233 - 24362175
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatg-ccggacaccacacgtgtc 58  Q
    |||||| ||||||||||||||||||  |||||||||| || |||||||| |||||||||    
T  24362233 ataattcagtgtaattatatgtgtcaatgtcgtgtcggtgtccggacacgacacgtgtc 24362175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 3025609 - 3025666
Alignment:
Q  42 cggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    ||||||| |||||||||| |||| ||||||||  | ||||||||||||||||| ||||    
T  3025609 cggacacgacacgtgtctgacactgtgacacggctaatccgaggagtgtccgtgcttc 3025666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 14634172 - 14634127
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggac 46  Q
    |||||| ||||||||||||| ||| ||||||||||||||| |||||    
T  14634172 ataattcagtgtaattatatttgttggtgtcgtgtcgatgtcggac 14634127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 11944700 - 11944732
Alignment:
Q  8 agtgtaattatatgtgtcggtgtcgtgtcgatg 40  Q
    |||||||||||||||||||||||||||| ||||    
T  11944700 agtgtaattatatgtgtcggtgtcgtgttgatg 11944732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12402722 - 12402686
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcg 37  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  12402722 ataatttaatgtaattatatgtgttggtgtcgtgtcg 12402686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 29510333 - 29510237
Alignment:
Q  3 aatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    |||| ||| |||||| | |||||||||| |||||| || ||||||| || ||||||  |||| | ||||| | | ||||||||||||||||| ||||    
T  29510333 aattcagtataattacaagtgtcggtgtagtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttc 29510237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 6020 - 5934
Alignment:
Q  8 agtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgt 94  Q
    |||||||||||||||||||||||||| ||| || || |||| |||||||||| |||| | ||||||| |||||| ||||||||||||    
T  6020 agtgtaattatatgtgtcggtgtcgtatcggtgtcgaacacgacacgtgtctgacacagagacacgccttatccaaggagtgtccgt 5934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 241622 - 241726
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttcg 100  Q
    ||||||||||||||||||  ||||||||||||||| | || ||||||| |||||||||  |||| | ||||||| | ||||||| ||||||||| ||||     
T  241622 ataatttagtgtaattatgagtgtcggtgtcgtgttggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttca 241721  T
Q  101 tagat 105  Q
    |||||    
T  241722 tagat 241726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 5414196 - 5414105
Alignment:
Q  8 agtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    ||||||||||||||| |||||||||||||  || ||||||| |||||||||| |||| | ||||| | |||||| |||||||||||| ||||    
T  5414196 agtgtaattatatgtatcggtgtcgtgtcagtgtcggacacgacacgtgtctgacacagggacacaccttatccaaggagtgtccgtgcttc 5414105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 46084022 - 46083931
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtcc 92  Q
    ||||| ||||||||||||||||||||||||||||||  |  ||||||| |||||||||| || ||| ||||||| ||||  |||||||||||    
T  46084022 ataatctagtgtaattatatgtgtcggtgtcgtgtcagtatcggacacgacacgtgtctgacgcggggacacgccttataagaggagtgtcc 46083931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 30982902 - 30982811
Alignment:
Q  8 agtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    |||||||||||| ||||||||||||||||| || | ||||| |||||||||  |||| | ||||||| | |||| | |||||||||| ||||    
T  30982902 agtgtaattataagtgtcggtgtcgtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccaaagagtgtccgtgcttc 30982811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13134478 - 13134532
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgt 55  Q
    |||||||||||||||||||||||||| ||||||||||| | || |||| ||||||    
T  13134478 ataatttagtgtaattatatgtgtcgatgtcgtgtcgacgtcgaacacaacacgt 13134532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 22234921 - 22234864
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtc 58  Q
    |||||| ||||||||| |||||||||||||||||||| || | ||||| |||||||||    
T  22234921 ataattcagtgtaattctatgtgtcggtgtcgtgtcggtgtctgacacgacacgtgtc 22234864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 30838238 - 30838331
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgt 94  Q
    ||||||||||||||||||| || |||||||||||||  || ||||| | |||||||||  ||||   ||||||| | | |||||||||||||||    
T  30838238 ataatttagtgtaattataagtatcggtgtcgtgtcagtgtcggacgcgacacgtgtccgacaccaagacacgcctaacccgaggagtgtccgt 30838331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 49431074 - 49431134
Alignment:
Q  32 gtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtcc 92  Q
    |||||| || ||||||| ||||||||| ||||| | ||||||| |||||||||||||||||    
T  49431074 gtgtcggtgtcggacacgacacgtgtccaacaccgggacacgccttatccgaggagtgtcc 49431134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 19500885 - 19500836
Alignment:
Q  5 tttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacg 54  Q
    |||||||||||||||||||  |||||||||||| || ||||||| |||||    
T  19500885 tttagtgtaattatatgtgatggtgtcgtgtcggtgtcggacacgacacg 19500836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5775389 - 5775353
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcg 37  Q
    |||||| |||||||||||||||||||||||| |||||    
T  5775389 ataattaagtgtaattatatgtgtcggtgtcatgtcg 5775353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40742619 - 40742655
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcg 37  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  40742619 ataatctagtgtaattatatgtgtcgatgtcgtgtcg 40742655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 46160924 - 46160960
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcg 37  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  46160924 ataattcagtgttattatatgtgtcggtgtcgtgtcg 46160960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 35222986 - 35223053
Alignment:
Q  32 gtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    |||||| || ||||||  |||||||||| |||||| ||||||||||||||||||||||||||| ||||    
T  35222986 gtgtcggtgtcggacatgacacgtgtctgacacggggacacgctttatccgaggagtgtccgtgcttc 35223053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 4987322 - 4987224
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    |||||| |||||||||| | |||| |||| ||||||| ||  |||||| |||||||||  |||| | ||||||| | ||||||||||||||||||||||    
T  4987322 ataattcagtgtaattacaagtgttggtgacgtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtacttc 4987224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 25064937 - 25065024
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgt 90  Q
    ||||||||||||||||||  |||| ||| |||||| | || ||||||| |||||||||| |||| | |||||| ||||||||||||||||    
T  25064937 ataatttagtgtaattat--gtgttggtatcgtgttggtgtcggacacgacacgtgtctgacaccgggacacggtttatccgaggagtgt 25065024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 11665974 - 11666030
Alignment:
Q  3 aatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtct 59  Q
    ||||||||||||||||||||||||||||||||| ||||   ||||| ||||||||||    
T  11665974 aatttagtgtaattatatgtgtcggtgtcgtgttgatgttagacacgacacgtgtct 11666030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 34185152 - 34185056
Alignment:
Q  3 aatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    |||| |||||||||| | |||||||||||||||| ||| ||||||  ||| |||||  |||| | ||||||| | ||||||||||||||||| ||||    
T  34185152 aattcagtgtaattacaagtgtcggtgtcgtgtccatgtcggacaagacatgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttc 34185056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 8039866 - 8039779
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagt 88  Q
    |||||| |||||||||||||||||||||||||||||| || ||||||  | || ||||  |||| | ||||||||| |||||| ||||    
T  8039866 ataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacatgagacatgtccgacaccgggacacgcttaatccgaagagt 8039779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 41961673 - 41961570
Alignment:
Q  9 gtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttcgtagatgta 108  Q
    ||||||||| | ||||||||||||||||| |  ||||||| |||||||||  |||| | ||||||| | ||||||| ||||||||| |||| ||| | ||    
T  41961673 gtgtaattacaagtgtcggtgtcgtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcataggtata 41961574  T
Q  109 aagt 112  Q
    ||||    
T  41961573 aagt 41961570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 13845536 - 13845469
Alignment:
Q  32 gtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    |||||| || ||||||| | |||||||| |||||| ||||||| |||||| |||||||||||| ||||    
T  13845536 gtgtcggtgtcggacacgagacgtgtctgacacggagacacgccttatccaaggagtgtccgtgcttc 13845469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 15314907 - 15314873
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  15314907 ataatttagtgtaattatatgtgttggtgtcgtgt 15314873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 11313831 - 11313795
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcg 37  Q
    ||||||||||||||||||||||||  |||||||||||    
T  11313831 ataatttagtgtaattatatgtgttagtgtcgtgtcg 11313795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 14209141 - 14209197
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgt 57  Q
    |||||| |||||||||| | ||||| ||||||||||| || ||||||| ||||||||    
T  14209141 ataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggacacgacacgtgt 14209197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 16789040 - 16789143
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttcg 100  Q
    |||||| |||||||||||| |||| |||||||||||  || ||||||  |||| |||| ||||||| ||||| | | ||  ||||||||||||| ||||     
T  16789040 ataattcagtgtaattataagtgttggtgtcgtgtcagtgtcggacatgacacatgtccaacacgg-gacacacctaatttgaggagtgtccgtgcttca 16789138  T
Q  101 tagat 105  Q
    |||||    
T  16789139 tagat 16789143  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 25211574 - 25211602
Alignment:
Q  8 agtgtaattatatgtgtcggtgtcgtgtc 36  Q
    |||||||||||||||||||||||||||||    
T  25211574 agtgtaattatatgtgtcggtgtcgtgtc 25211602  T

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Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 9777 - 9680
Alignment:
Q  2 taatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgtacttc 99  Q
    ||||| |||||||||||||||||||||||||||| | || | ||||| |||| ||||| |||  | ||||||  | ||||||||||||||||| ||||    
T  9777 taattcagtgtaattatatgtgtcggtgtcgtgttggtgtcagacacgacacttgtctgacatcgggacacgtataatccgaggagtgtccgtgcttc 9680  T

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Target: scaffold0123 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 44556 - 44499
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtc 58  Q
    |||||| ||||||||||||||||||||| |||||||| ||  |||||| |||||||||    
T  44556 ataattcagtgtaattatatgtgtcggtatcgtgtcggtgttggacacaacacgtgtc 44499  T

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Target: scaffold0044 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 53208 - 53301
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgt 94  Q
    |||||| |||||||||||| ||||||||| ||||||| || ||||||  |||||||||  |||| | |||||| || |||| || |||||||||    
T  53208 ataattcagtgtaattataagtgtcggtgccgtgtcggtgtcggacatgacacgtgtccgacaccgggacacgtttaatccaagaagtgtccgt 53301  T

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Target: scaffold0236 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 25799 - 25765
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgt 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  25799 ataatttagtgtaattataagtgtcggtgtcgtgt 25765  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 84996 - 84947
Alignment:
Q  9 gtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtc 58  Q
    |||||||||||| |||||||||| |||||||| || |||| |||||||||    
T  84996 gtgtaattatatatgtcggtgtcatgtcgatgtcgaacacaacacgtgtc 84947  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 263403 - 263310
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtccgt 94  Q
    |||||| |||||||||||| ||||| ||||||||||| || | ||||| ||||||||   | ||   ||||||| | |||||||||||||||||    
T  263403 ataattcagtgtaattataagtgtcagtgtcgtgtcggtgtcagacacgacacgtgttcgataccaagacacgcctaatccgaggagtgtccgt 263310  T

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Target: scaffold0171 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 23448 - 23484
Alignment:
Q  1 ataatttagtgtaattatatgtgtcggtgtcgtgtcg 37  Q
    |||||| |||||||||||| |||||||||||||||||    
T  23448 ataattcagtgtaattataagtgtcggtgtcgtgtcg 23484  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 71755 - 71843
Alignment:
Q  3 aatttagtgtaattatatgtgtcggtgtcgtgtcgatgccggacaccacacgtgtctaacacggtgacacgctttatccgaggagtgtc 91  Q
    |||| ||||||||||   ||||| ||||||||||| || ||||||| |||||||||  |||| | ||||||  | ||||||||||||||    
T  71755 aattcagtgtaattactagtgtcagtgtcgtgtcggtgtcggacacaacacgtgtccgacaccgggacacgactaatccgaggagtgtc 71843  T

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