View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1840_low_1 (Length: 429)
Name: NF1840_low_1
Description: NF1840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1840_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 380
Target Start/End: Original strand, 28539979 - 28540349
Alignment:
| Q |
7 |
aacagagccaacaacagcttccatgaacgcagcagcaatatggaaaacaccagcaacgaatctacgttgtcaagtaactcgatcagaagttatagaaaac |
106 |
Q |
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| T |
28539979 |
aacagagccaacaacagcttccatgaacgcagcagcagtatggaaaacaccagcaacgaatctacgttgtcaagtaactcgatcagaagttatagaaaac |
28540078 |
T |
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| Q |
107 |
ggattatcaccgcctctgagtccatgtagatcaccggtactaggcggtaccggaatcagaccagatctgacatcggcttgtgaagcattaacaagggatg |
206 |
Q |
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| T |
28540079 |
ggattatcaccacctatgagtccatgtagatcaccggtactaagcggtaccggaatcagaccagatctgacatcggctgctcaagcatttacca---ctg |
28540175 |
T |
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| Q |
207 |
tggtggagaatgagtttgtagccggaggaaagacgaagaaagagaagagtggagtcccggtgtatgtgaggatgccgttagatagtgtgacgatggggaa |
306 |
Q |
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| T |
28540176 |
aggtggagaacgaatatgtatcgggagggaagacgaagaaagagaagagtggagtcccggtgtatgtgatgatgccgttagatagtgtgacgatggggaa |
28540275 |
T |
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| Q |
307 |
tggtgtgaataggaagaaggcggtgaatgcggcgatggcggcgttgaagagtgctggagtggaaggagtgatga |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28540276 |
tggtgtgaataggaagaaggcggtgaatgcggcgatggcggcgttgaagagtgctggagtggaaggagtgatga |
28540349 |
T |
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