View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1840_low_2 (Length: 261)
Name: NF1840_low_2
Description: NF1840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1840_low_2 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 45 - 261
Target Start/End: Original strand, 35972047 - 35972263
Alignment:
| Q |
45 |
attacattcaattatgttattttattaaattattactagaatcaacatgtctatgtcgtatatggtgtatgtgtctggactagtgatccatatggtttaa |
144 |
Q |
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| T |
35972047 |
attacattcaattattctattttattaaattattactaaaatcaacgtgtctatgtcgtatatggtgtatgtgtctggactagtgattcatatggtttaa |
35972146 |
T |
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| Q |
145 |
tacaacaccttaaacgctaattttgatattagttttttcgtgtaatatagcaaggacaactagtatatctcaagtatatttcatgttatatgctctgaat |
244 |
Q |
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| T |
35972147 |
tacaacaccttaagcgctaattttgatattagttttttcgtgtaatatagcaaggacaactagtatatctcgagtatatttcatgttatatgctctgaat |
35972246 |
T |
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| Q |
245 |
ttacatactaaaaacaa |
261 |
Q |
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| T |
35972247 |
ttacatactaaaaacaa |
35972263 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 47362606 - 47362568
Alignment:
| Q |
43 |
taattacattcaattatgttattttattaaattattact |
81 |
Q |
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| T |
47362606 |
taattacattcaattatgtaattttcttaaattattact |
47362568 |
T |
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Target: scaffold0050 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 59167 - 59130
Alignment:
| Q |
45 |
attacattcaattatgttattttattaaattattacta |
82 |
Q |
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| T |
59167 |
attacattcaattatgtcgttttattaaattattacta |
59130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 41989608 - 41989571
Alignment:
| Q |
43 |
taattacattcaattatgttattttattaaattattac |
80 |
Q |
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| T |
41989608 |
taattacattcaattatgtcattttcttaaattattac |
41989571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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