View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18410_high_1 (Length: 262)

Name: NF18410_high_1
Description: NF18410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18410_high_1
NF18410_high_1
[»] chr7 (3 HSPs)
chr7 (20-249)||(46847158-46847394)
chr7 (126-200)||(46658654-46658728)
chr7 (134-229)||(42011431-42011525)
[»] chr5 (3 HSPs)
chr5 (126-215)||(8204336-8204425)
chr5 (134-223)||(26305994-26306082)
chr5 (134-223)||(29538972-29539062)
[»] chr6 (3 HSPs)
chr6 (126-215)||(34051312-34051401)
chr6 (134-194)||(27336276-27336335)
chr6 (134-194)||(27397016-27397075)
[»] chr3 (4 HSPs)
chr3 (126-215)||(30319734-30319823)
chr3 (126-213)||(45245216-45245303)
chr3 (134-229)||(26250523-26250617)
chr3 (137-229)||(49016246-49016337)
[»] chr4 (4 HSPs)
chr4 (137-223)||(42477441-42477526)
chr4 (134-231)||(53409111-53409207)
chr4 (134-194)||(31417349-31417408)
chr4 (134-194)||(48512659-48512718)
[»] chr1 (1 HSPs)
chr1 (134-229)||(3154484-3154578)
[»] scaffold0006 (1 HSPs)
scaffold0006 (134-211)||(282194-282270)
[»] chr2 (1 HSPs)
chr2 (136-176)||(14185522-14185562)


Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 46847394 - 46847158
Alignment:
Q  20 catggcactattcgatgtgttgccggtcatgctctatgtgactaatggtgttgtttgaagcaagtcatgacatttaccatgaatgctttgttgcatggtg 119  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46847394 catggcactattcgatgtgtttccggtcatgttctatgtgactaatggtgttgtttgaagcaagtcatgacatttaccatgaatgctttgttgcatggtg 46847295  T
Q  120 acattta-------ccaatgaaagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacaca 212  Q
    |||||||       ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  46847294 acatttaggctggaccaatgaaagtattggtgcatgatggaccaataattaaaaccattaaattaatatgtaagcacaataatactatgcaccacacaca 46847195  T
Q  213 tcttattatttcatttatttctttaaaatttgctcct 249  Q
    |||||||||||||||||||||||||||||||||||||    
T  46847194 tcttattatttcatttatttctttaaaatttgctcct 46847158  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 46658654 - 46658728
Alignment:
Q  126 accaatgaaagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactat 200  Q
    |||||||||||||||||||||| ||||||||| |||||||  |||| |||||| |||||||||||||||||||||    
T  46658654 accaatgaaagtattggtccataatggaccaaaaattaaagtcattggattaacatgtaagcacaataatactat 46658728  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 229
Target Start/End: Complemental strand, 42011525 - 42011431
Alignment:
Q  134 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattatttcattta 229  Q
    |||||||||||||| ||||||||||| ||| ||||||| |||| ||||||| ||||||||| |  ||||||| | ||| ||| |||||||| ||||    
T  42011525 aagtattggtccataatggaccaatatttataaccattggatt-atatgtatgcacaataacataatgcacctctcacgtctaattatttctttta 42011431  T

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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 8204336 - 8204425
Alignment:
Q  126 accaatgaaagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatct 215  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||| || || ||||||||    
T  8204336 accaatgaaagtattggtccatgatggaccaaaaattaaagccattagattaacatgtaagcacaataatactatacatcatacacatct 8204425  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 26305994 - 26306082
Alignment:
Q  134 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattattt 223  Q
    |||||||||||||| ||||| ||||| ||| |  |||| ||||| |||||||||||||||| || ||  ||| ||||||||| |||||||    
T  26305994 aagtattggtccataatggatcaatatttatagtcattggatta-tatgtaagcacaataacacaatatacctcacacatctaattattt 26306082  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 29539062 - 29538972
Alignment:
Q  134 aagtattggtccatgatggaccaataatt--aaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattattt 223  Q
    |||||||||||||| ||||||||||| ||  | | ||||| ||||| |||| ||||||||||| || || |||| ||||||||| |||||||    
T  29539062 aagtattggtccataatggaccaatatttttatagccattggatta-tatgcaagcacaataacacaatacacctcacacatctaattattt 29538972  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 34051312 - 34051401
Alignment:
Q  126 accaatgaaagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatct 215  Q
    |||||||||||||||||||||||||||||||| |||||||  ||||||||||| |||||| |||||||| ||||| || |||||||||||    
T  34051312 accaatgaaagtattggtccatgatggaccaaaaattaaagtcattagattaacatgtaaacacaataacactatacatcacacacatct 34051401  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 27336335 - 27336276
Alignment:
Q  134 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataa 194  Q
    |||||||||| ||| ||||||||||| ||| ||||||| |||| ||||||| |||||||||    
T  27336335 aagtattggttcataatggaccaatatttataaccattggatt-atatgtatgcacaataa 27336276  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 27397075 - 27397016
Alignment:
Q  134 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataa 194  Q
    |||||||||| ||| ||||||||||| ||| ||||||| |||| ||||||| |||||||||    
T  27397075 aagtattggttcataatggaccaatatttataaccattggatt-atatgtatgcacaataa 27397016  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 30319734 - 30319823
Alignment:
Q  126 accaatgaaagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatct 215  Q
    |||||||||||||||||||||| ||||||||  ||||||| |||||||||||| ||||||| ||||||| ||||| || |||||||||||    
T  30319734 accaatgaaagtattggtccataatggaccacaaattaaagccattagattaacatgtaagtacaataacactatacatcacacacatct 30319823  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 45245216 - 45245303
Alignment:
Q  126 accaatgaaagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacat 213  Q
    |||||||||||||||||||||| ||||||||| ||||||| |||||||||||  ||||||| ||||||| ||||| || |||||||||    
T  45245216 accaatgaaagtattggtccataatggaccaaaaattaaagccattagattagcatgtaagtacaataacactatacatcacacacat 45245303  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 229
Target Start/End: Original strand, 26250523 - 26250617
Alignment:
Q  134 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattatttcattta 229  Q
    |||||||||||||| ||||||||||| ||| |||||||||||| |||| || |||||||||||  ||||||| ||||| ||| |||||||| ||||    
T  26250523 aagtattggtccataatggaccaatatttataaccattagatt-atatatatgcacaataatataatgcacctcacacgtctaattatttccttta 26250617  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 229
Target Start/End: Complemental strand, 49016337 - 49016246
Alignment:
Q  137 tattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattatttcattta 229  Q
    ||||||||||| ||| ||||||| ||| ||||||| ||||| |||||| ||||||||| |  ||||||| ||||| ||| |||||||||||||    
T  49016337 tattggtccataatgaaccaatatttataaccattggatta-tatgtatgcacaataacataatgcacctcacacgtctaattatttcattta 49016246  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 42477441 - 42477526
Alignment:
Q  137 tattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattattt 223  Q
    ||||||||||| ||||||||||| ||| ||||||| |||| |||| |||||||||||| || || |||| ||||||||| |||||||    
T  42477441 tattggtccataatggaccaatatttataaccattggatt-atatataagcacaataacacaatacacctcacacatctaattattt 42477526  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 53409111 - 53409207
Alignment:
Q  134 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattatttcatttatt 231  Q
    ||||||||||| || ||||||||||| ||| ||||||| |||| |||| || ||||||||| |  ||||||| ||||| | | |||||||| ||||||    
T  53409111 aagtattggtctataatggaccaatatttataaccattggatt-atatatatgcacaataacataatgcacctcacacgtttaattatttcttttatt 53409207  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 31417408 - 31417349
Alignment:
Q  134 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataa 194  Q
    ||||||||||| || ||||||||||| ||| ||||||| |||| ||||||| |||||||||    
T  31417408 aagtattggtctataatggaccaatatttataaccattggatt-atatgtatgcacaataa 31417349  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 48512659 - 48512718
Alignment:
Q  134 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataa 194  Q
    |||||||||||||| ||||||||||| ||| ||||||| || | ||||||| |||||||||    
T  48512659 aagtattggtccataatggaccaatatttataaccatt-gaattatatgtatgcacaataa 48512718  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 229
Target Start/End: Original strand, 3154484 - 3154578
Alignment:
Q  134 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattatttcattta 229  Q
    |||||||||||||| ||||||||||| ||| ||||| | |||| ||||||| ||||||||| |  ||||||| ||||| ||| |||||||| ||||    
T  3154484 aagtattggtccataatggaccaatatttataaccactggatt-atatgtatgcacaataacataatgcacctcacacgtctaattatttccttta 3154578  T

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Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 282194 - 282270
Alignment:
Q  134 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacac 211  Q
    |||||||||| ||| || |||||||| ||| |||||||||||| ||||||| |||||||||||  ||||||| |||||    
T  282194 aagtattggttcataatagaccaatatttataaccattagatt-atatgtatgcacaataatataatgcacctcacac 282270  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 14185522 - 14185562
Alignment:
Q  136 gtattggtccatgatggaccaataattaaaaccattagatt 176  Q
    ||||||||||||||||||||||| |||  ||||||||||||    
T  14185522 gtattggtccatgatggaccaattatttcaaccattagatt 14185562  T

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