View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18410_low_2 (Length: 255)
Name: NF18410_low_2
Description: NF18410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18410_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 14547700 - 14547461
Alignment:
| Q |
1 |
taaaagtcgatgcaaacaaattacatagtgttctggtttattatgatccaaggtatatgttagttataatgacaattggtacaaactatgaatgaaggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14547700 |
taaaagtcgatgcaaacaaattacatagtgttctggtttattatgatccaaggtatatgtttgttataatgacaattggtacaaactatgaatgaaggaa |
14547601 |
T |
|
| Q |
101 |
aaggacagtcactcattcagtccacttaacccctcttccccaagttcaagaagacaagtgttaacagaaaaaaggaaactgagtggtaccagattgtttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14547600 |
aaggacagtcactcattcagtccacttaacccctcttccccaagttcaacaagacaagtgttaacagaaaaaaggaaactgagtggtaccagattgtttt |
14547501 |
T |
|
| Q |
201 |
ttcttgaataacttgcgctggcgctcaattgcctcctttg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14547500 |
ttcttgaataacttgcgctggcgctcaattgcctcctttg |
14547461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 37565364 - 37565113
Alignment:
| Q |
9 |
gatgcaaacaaattacatagtgttctggtttattatgatccaaggtatatgttagttataatgacaattggtacaaactatgaatgaagg---------- |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37565364 |
gatgcaaacaaattacatagtgttctggtttattatgatccaaggtatatgttggttataatgacaattggtacaaactacgaatgaagggaaagggaaa |
37565265 |
T |
|
| Q |
99 |
----------aaaaggacagtcactcattcagtccacttaacccctcttccccaagttcaagaagacaagtgttaacagaaaaaaggaaactgagtggta |
188 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37565264 |
ggaaaagcggaaaaggacagttactcgttcagtccacttaacccttcttccccaagttcaggaagacaagtgttaacagaaaaaaggaaactgagtggta |
37565165 |
T |
|
| Q |
189 |
ccagattgttttttcttgaataacttgcgctggcgctcaattgcctcctttg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37565164 |
ccagattgttttttcttgaataacttgcgctggcgctcaattgcctcctttg |
37565113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 35 - 240
Target Start/End: Complemental strand, 37689590 - 37689365
Alignment:
| Q |
35 |
ggtttattatgatccaaggtatatgttagttataatgacaattggtacaaactatgaatgaagg--------------------aaaaggacagtcactc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37689590 |
ggtttattatgatccaaggtatatgttagttataatgacaattggtacaaactatgaatgaagggaaagggaaaggaaaagcggaaaaggacagtcactc |
37689491 |
T |
|
| Q |
115 |
attcagtccacttaacccctcttccccaagttcaagaagacaagtgttaacagaaaaaaggaaactgagtggtaccagattgttttttcttgaataactt |
214 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37689490 |
gttcagtccacttaacccttcttccccaagttcaggaagacaagtgttaacagaaaaaaggaaactgagtggtaccagattgttttttcttgaataactt |
37689391 |
T |
|
| Q |
215 |
gcgctggcgctcaattgcctcctttg |
240 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
37689390 |
gcgctggcgctcaattgcctcctttg |
37689365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 35 - 240
Target Start/End: Complemental strand, 37525153 - 37524941
Alignment:
| Q |
35 |
ggtttattatgatccaaggtatatgttagttataatgacaattggtacaaactatgaatgaagg--------------------aaaaggacagtcactc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
37525153 |
ggtttattatgatccaaggtatatgttagttataatgacaattggtacaaactacgaatgaagggaaagggaaaggaaaagcggaaaaggacagtcactc |
37525054 |
T |
|
| Q |
115 |
attcagtccacttaacccctcttccccaagttcaagaagacaagtgttaacagaaaaaaggaaactgagtggtaccagattgttttttcttgaataactt |
214 |
Q |
| |
|
||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37525053 |
gttcagtccacttaacccttcttccccagatt-------------gttaacagaaaaaaggaaactgagtggtaccagattgttttttcttgaataactt |
37524967 |
T |
|
| Q |
215 |
gcgctggcgctcaattgcctcctttg |
240 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
37524966 |
gcgctggcgctcaattgcctcctttg |
37524941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 37786932 - 37786691
Alignment:
| Q |
11 |
tgcaaacaaattacatagtgttctggtttattatgatccaaggtatatgtta-gttataatgacaattggtacaaactatgaatgaagg--------aaa |
101 |
Q |
| |
|
||||||||||||| ||| ||| | |||||||||||||||| ||||||| | |||| || |||||| |||||||||| ||| ||||| ||| |
|
|
| T |
37786932 |
tgcaaacaaattatataatgtacaggtttattatgatccatggtatattacatgttacaaaaacaattagtacaaactaagaacgaagggagagcgtaaa |
37786833 |
T |
|
| Q |
102 |
aggacagtcactcattcagtccacttaacccctc--------ttccccaagttcaagaagacaagtgttaacagaaaaaaggaaactgagtggtaccaga |
193 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| ||||||| | ||| |||||||||| |||| | ||||| |||||||| ||| ||||||| |
|
|
| T |
37786832 |
aggacagtcactcatgcagtctgcttaacccctcatccagtcttccccatgctcaggaagacaagttttaaaataaaaatggaaactgggtgttaccaga |
37786733 |
T |
|
| Q |
194 |
ttgttttttcttgaataacttgcgctggcgctcaattgcctc |
235 |
Q |
| |
|
|||||||||||| ||||||||||| || || ||||| ||||| |
|
|
| T |
37786732 |
ttgttttttctttaataacttgcgttgtcgatcaatagcctc |
37786691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 37617860 - 37617709
Alignment:
| Q |
96 |
aggaaaaggacagtcactcattcagtccacttaacccctcttccccaagttcaagaagacaagtgttaacagaaa-------aaaggaaactgagtggta |
188 |
Q |
| |
|
|||||||| |||||||||||| | ||| |||||| | ||||||||||||| | |||||| ||| ||| ||||| |||||| |||| ||| || |
|
|
| T |
37617860 |
aggaaaagaacagtcactcatgcggtcagcttaacacgtcttccccaagtttagtaagacaggtgctaaaagaaaggaaaaaaaaggacactgggtgtta |
37617761 |
T |
|
| Q |
189 |
ccagattgttttttcttgaataacttgcgctggcgctcaattgcctcctttg |
240 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| ||||||| ||||||||| |
|
|
| T |
37617760 |
ccagattgttttttcttgaataaattgtgctgctgctcaatatcctcctttg |
37617709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University