View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18410_low_3 (Length: 239)

Name: NF18410_low_3
Description: NF18410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18410_low_3
NF18410_low_3
[»] chr3 (1 HSPs)
chr3 (1-222)||(14547829-14548050)
[»] chr5 (7 HSPs)
chr5 (1-222)||(37525309-37525530)
chr5 (1-224)||(37689746-37689969)
chr5 (33-222)||(37587502-37587691)
chr5 (1-216)||(37793812-37794027)
chr5 (1-216)||(37618044-37618259)
chr5 (46-222)||(37787120-37787296)
chr5 (102-139)||(37785231-37785268)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 14547829 - 14548050
Alignment:
Q  1 tgtttttcttggctcttttccatgcctgaagataagggtgatggaatagatgcagaggctggattgctggaagatattctcattcacgaggaaatctata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  14547829 tgtttttcttggctcttttccatgcctgaagataagggtgatggaatagatgcataggcttgattgctggaagatattctcattcacgaggaaatctata 14547928  T
Q  101 agtctcgactagccagcattaaatgggtaagttgctacttctccgattattctatttcctctttatacttctaacgactgaacaattttcaggaagaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14547929 agtctcgactagccagcattaaatgggtaagttgctacttctccgattattctatttcctctttatacttctaacgactgaacaattttcaggaagaaga 14548028  T
Q  201 aattgttttgcgagagagggac 222  Q
    ||||||||||||||||||||||    
T  14548029 aattgttttgcgagagagggac 14548050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37525309 - 37525530
Alignment:
Q  1 tgtttttcttggctcttttccatgcctgaagataagggtgatggaatagatgcagaggctggattgctggaagatattctcattcacgaggaaatctata 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37525309 tgtttttcttggcccttttccatgcctgaagataagggtgatggaatagatgcagaggctggattgctggaagatattctcattcacgaggaaatctata 37525408  T
Q  101 agtctcgactagccagcattaaatgggtaagttgctacttctccgattattctatttcctctttatacttctaacgactgaacaattttcaggaagaaga 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||  |||| ||||||||||||||||||||    
T  37525409 agtctcgactagccagcattaaacgggtaagttgctacttctccgcttattctatttcctctttatacttctactgactcaacaattttcaggaagaaga 37525508  T
Q  201 aattgttttgcgagagagggac 222  Q
    ||||||||||||||||||||||    
T  37525509 aattgttttgcgagagagggac 37525530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 37689746 - 37689969
Alignment:
Q  1 tgtttttcttggctcttttccatgcctgaagataagggtgatggaatagatgcagaggctggattgctggaagatattctcattcacgaggaaatctata 100  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37689746 tgtttttcttggcccttttccatgcatgaagataagggtgatggaatagatgcagaggctggattgctggaagatattctcattcacgaggaaatctata 37689845  T
Q  101 agtctcgactagccagcattaaatgggtaagttgctacttctccgattattctatttcctctttatacttctaacgactgaacaattttcaggaagaaga 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  37689846 agtctcgactagccagcattaaacgggtaagttgctacttctccgcttattctatttcctctttatacttctactgactgaacaattttcaggaagaaga 37689945  T
Q  201 aattgttttgcgagagagggactg 224  Q
    | ||||||||||||||||||||||    
T  37689946 acttgttttgcgagagagggactg 37689969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 33 - 222
Target Start/End: Original strand, 37587502 - 37587691
Alignment:
Q  33 taagggtgatggaatagatgcagaggctggattgctggaagatattctcattcacgaggaaatctataagtctcgactagccagcattaaatgggtaagt 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37587502 taagggtgatggaatagatgcagaggctggattgctggaagatattctcattcacgaggaaatctataagtctcgactagccagcattaaacgggtaagt 37587601  T
Q  133 tgctacttctccgattattctatttcctctttatacttctaacgactgaacaattttcaggaagaagaaattgttttgcgagagagggac 222  Q
    ||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  37587602 tgctacttctccgcttattctatttcctctttatacttctactgactgaacaattttcaggaagaagaaattgttttgcgagagagggac 37587691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 37793812 - 37794027
Alignment:
Q  1 tgtttttcttggctcttttccatgcctgaagataagggtgatggaatagatgcagaggctggattgctggaagatattctcattcacgaggaaatctata 100  Q
    ||||||||||||| |||||| |||  ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  37793812 tgtttttcttggcccttttctatggttgaagataagggtgatggaatagatgcagaggctggattgtcggaagatattctcattcacgaggaaatctata 37793911  T
Q  101 agtctcgactagccagcattaaatgggtaagttgctacttctccgattattctatttcctctttatacttctaacgactgaacaattttcaggaagaaga 200  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |   |||||||||| ||||||||||    
T  37793912 agtctcgactagccagcattaaacgggtaagttgctacttcttcgattattctatttcctctttatacttctaatggtagaacaatttttaggaagaaga 37794011  T
Q  201 aattgttttgcgagag 216  Q
    ||||| ||||| ||||    
T  37794012 aattgctttgcaagag 37794027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 37618044 - 37618259
Alignment:
Q  1 tgtttttcttggctcttttccatgcctgaagataagggtgatggaatagatgcagaggctggattgctggaagatattctcattcacgaggaaatctata 100  Q
    ||||||||||||| |||||| |||  ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||    
T  37618044 tgtttttcttggcccttttctatggttgaagataagggtgatggaatagatgcagaggctggattgtcggaagatattctcattcaggaggaaatctata 37618143  T
Q  101 agtctcgactagccagcattaaatgggtaagttgctacttctccgattattctatttcctctttatacttctaacgactgaacaattttcaggaagaaga 200  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |   |||||||||| ||||||||||    
T  37618144 agtctcgactagccagcattaaacgggtaagttgctacttcttcgattattctatttcctctttatacttctaatggtagaacaatttttaggaagaaga 37618243  T
Q  201 aattgttttgcgagag 216  Q
    ||| | ||||||||||    
T  37618244 aatcgctttgcgagag 37618259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 46 - 222
Target Start/End: Original strand, 37787120 - 37787296
Alignment:
Q  46 atagatgcagaggctggattgctggaagatattctcattcacgaggaaatctataagtctcgactagccagcattaaatgggtaagttgctacttctccg 145  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  37787120 atagatgcagaggctggattgcaggaagatattctcattcatgaggaaatctataagtctcgactagccagcattaaacgggtaagttgctacttctctg 37787219  T
Q  146 attattctatttcctctttatacttctaacgactgaacaattttcaggaagaagaaattgttttgcgagagagggac 222  Q
    ||| ||||||||||| | |||  |  |||  |  |||||||||||||||||||||||||| | ||||||||||||||    
T  37787220 attgttctatttcctttgtatgttattaatcatggaacaattttcaggaagaagaaattgctctgcgagagagggac 37787296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 37785268 - 37785231
Alignment:
Q  102 gtctcgactagccagcattaaatgggtaagttgctact 139  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  37785268 gtctcgactagccagcattaaatggataagttgctact 37785231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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