View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18411_high_10 (Length: 473)
Name: NF18411_high_10
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 34679397 - 34679084
Alignment:
| Q |
18 |
ataaggtagatattctgaggtaaagttgatcagcaattagatttggttctcttaaaattccacaaaagttaaagtcgaggcttttggtgatctcgagaaa |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34679397 |
ataaggtagatattctgaggtgaagttgatcagcaattagatttggttctcttaaaattccacaaaagttaaagtcgaggcttttggtgatctcgagaaa |
34679298 |
T |
|
| Q |
118 |
caaaacagggccagaaagagagagagaaagatgaatattggagggctattagtataggtaattatatatacaacaaagataaaattgtacagtcagaccc |
217 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34679297 |
caaaacagggtcagaaagagagagagaaagatgaatattggaggactattagtataggtaattatatatacaac-aagataaaattgtacagtcagaccc |
34679199 |
T |
|
| Q |
218 |
tcgtctctcccacaaattgtcact-----tca-ctgggtgcaatttgagatatcttgagtgaggaaaatttgatttaaatagatatttagag-cttgaga |
310 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34679198 |
tcgtctctcccacaaattgtcactggcactcagctgggtgcaatttgagatatcttgagtgaggaaaatttgatttaaatagatatttagagtgaagaga |
34679099 |
T |
|
| Q |
311 |
gtaaagtttcaaatt |
325 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
34679098 |
gtaaagtttcaaatt |
34679084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 325 - 410
Target Start/End: Complemental strand, 34679018 - 34678933
Alignment:
| Q |
325 |
tatgggactgactatatctatatctagtgttcacacaaattgttttctactttttatttatatcatagatttagatgatattttaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34679018 |
tatgggactgactatatctatatctagtgttcacacaaattgttttctactttttatttatatcatagatttagatgatattttaa |
34678933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 401 - 456
Target Start/End: Complemental strand, 34678923 - 34678868
Alignment:
| Q |
401 |
gatattttaaagtggttcatagatgataatgaaatatacgatgttgattaaaataa |
456 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
34678923 |
gatattttaaagtggttcatagatgatattgaaatatacgatgttgataaaaataa |
34678868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University