View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18411_high_15 (Length: 419)
Name: NF18411_high_15
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 3808874 - 3808484
Alignment:
| Q |
1 |
gtgtgtttggttttacttttgcatgagacaaaattgattttagaggtatataattaattgacatatttggaaatgtgctccagtgtaattgattttgtct |
100 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3808874 |
gtgtatttggttttacttttgcacgagacaaaattgattttagaggtatataattaattgacatatttggaaatgtgctctagtgtaattgattttgtct |
3808775 |
T |
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| Q |
101 |
ccataattaattctaatttgaacttaaaatttggaggttttgcctaaacattgcttatgtttgattgaattccctatgt----tgaatctaaggtgatta |
196 |
Q |
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| T |
3808774 |
ccataattaattctaatttgaa-------------ggttttgcctaaacattgcttatgtttgattgaattccctatgtatgttgaatctaaggtgatta |
3808688 |
T |
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| Q |
197 |
acagggtacacacgtagttgaatccgaagtgtacttatgtttgattcattcgcttaaaagtgaaatcaactgtaaatttgtggctaaaaatcacgtttgg |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3808687 |
acagggtacacacgtagttgaatccgaagtgtacttatgtttgattcattcccttaaaagtgaaatcaactgtaaatttgtggctaaaaatcacgtttgg |
3808588 |
T |
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| Q |
297 |
agtaggaaacttcaaatctaaaagggaaatggaactgaaaagatggggtaatggcgttttcttttgcaacaaatggcaagagttcatagaatactactca |
396 |
Q |
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| T |
3808587 |
agtaggaaacttcaaatctaaaagggaaatggaactgaaaagatggggtaatggcgttttcttttgcaacaaatggcaagagttcatagaatactactca |
3808488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 11038100 - 11038216
Alignment:
| Q |
25 |
gagacaaaattgattttagaggtatataattaa--ttgacatatttggaaatgtgctccagtgtaattgattttgtctccataattaattctaatttgaa |
122 |
Q |
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||||||||||||||| ||||||||||||||| | ||||||| ||||| |||| ||| | || | |||||||| ||||| | || ||||||| ||||| |
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| T |
11038100 |
gagacaaaattgattctagaggtatataattgattttgacatgtttgg--atgttctcgaatggagttgatttttcctccagagttgattctaacttgaa |
11038197 |
T |
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| Q |
123 |
cttaaaatttggaggtttt |
141 |
Q |
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||||||||||||||||| |
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| T |
11038198 |
gctaaaatttggaggtttt |
11038216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 50375638 - 50375588
Alignment:
| Q |
4 |
tgtttggttttacttttgcatgagacaaaattgattttagaggtatataat |
54 |
Q |
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| T |
50375638 |
tgtttgattctacttttggatgagtcaaaattgattttagaggtgtataat |
50375588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 3716800 - 3716755
Alignment:
| Q |
27 |
gacaaaattgattttagaggtatataattaat--tgacatatttgg |
70 |
Q |
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| T |
3716800 |
gacaaaattgattttagaggtatagaattaattctgacatatttgg |
3716755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 389
Target Start/End: Complemental strand, 29838436 - 29838399
Alignment:
| Q |
352 |
gttttcttttgcaacaaatggcaagagttcatagaata |
389 |
Q |
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| T |
29838436 |
gttttcttttgcaacaaatggcaagagtttgtagaata |
29838399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 380
Target Start/End: Complemental strand, 217193 - 217133
Alignment:
| Q |
320 |
gggaaatggaactgaaaagatggggtaatggcgttttcttttgcaacaaatggcaagagtt |
380 |
Q |
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|||||||| ||||||| | ||| || |||| ||||| ||||||||||||||||||| |||| |
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| T |
217193 |
gggaaatgaaactgaagaaatgcggcaatgacgtttacttttgcaacaaatggcaacagtt |
217133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 380
Target Start/End: Complemental strand, 222138 - 222078
Alignment:
| Q |
320 |
gggaaatggaactgaaaagatggggtaatggcgttttcttttgcaacaaatggcaagagtt |
380 |
Q |
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|||||||||||||||| | ||| || || | ||||| ||||||||||||||||||| |||| |
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| T |
222138 |
gggaaatggaactgaagaaatgcggcaacgacgtttacttttgcaacaaatggcaacagtt |
222078 |
T |
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