View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18411_high_22 (Length: 352)
Name: NF18411_high_22
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 29654421 - 29654604
Alignment:
| Q |
18 |
acatgtgtcacattattttcatcaccaagtgtgctacctcaaaaataatattatttttgcttatgtaggcatgtcctcccaaagaaaccaaaaattgttc |
117 |
Q |
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| T |
29654421 |
acatgtgtcacattattttcatcaccaagtgtgctccctcaaaaataatattatttttgcttatgtaggcatgtcctcccaaagaaaccaaaaattgttc |
29654520 |
T |
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| Q |
118 |
aaggttagcttatactttatgttgcatgtatcttctccaagtttctgtgcattgtctaaaaccgtagcagacaaacttctcaac |
201 |
Q |
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| T |
29654521 |
aaggttagcttatactttatgttgcatgtatcttctccaagtttctgtgcattgtctagaaccgtagcagacaaacttctcaac |
29654604 |
T |
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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 283 - 345
Target Start/End: Original strand, 29654695 - 29654757
Alignment:
| Q |
283 |
attttataatattgttataagtttggtacataattactaagagtgtgacacatggttcatctc |
345 |
Q |
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| T |
29654695 |
attttataatattgttataagtttggtacataattactaagagtgtgacacatggttcatctc |
29654757 |
T |
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