View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18411_high_23 (Length: 343)
Name: NF18411_high_23
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 35 - 336
Target Start/End: Original strand, 36932305 - 36932606
Alignment:
| Q |
35 |
ggagagtgaatagaagaatttgttgagcagagcaatttgaagaggagttgtgtgagcaacaattgagaactaaaagaggcacaatgtgaaattgatcaca |
134 |
Q |
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| T |
36932305 |
ggagagtgaatagaagaatttgttgagcagagcaatttgaagaggagttgtgtgagcaacaattgagaactaaaagaggcacaatgtgaaattgatcaca |
36932404 |
T |
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| Q |
135 |
tattgatatactccatttataccaatctttgttttacttttgtatcatatcaaatcaaatacaatgtatatgcaaataaatgagcaaaccaatctttatt |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36932405 |
tattgatatactccatttataccaatctttgttttactttcgtatcatatcaaatcaaatacaatgtatatgcaaataaatgagcaaaccaatctttatc |
36932504 |
T |
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| Q |
235 |
acaccttatcaaaatgaagaatgcaagatacaaaactttgagtcacgtggcacaaattggtaggaaatatttaccaagccattaacacccacattcttct |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36932505 |
acaccttatcaaaatgaagaatgcaagatacaaaactttgagtcacgtggcacaaattggtaggaaatattgaccaagccattaacacccacattcttct |
36932604 |
T |
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| Q |
335 |
ct |
336 |
Q |
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|| |
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| T |
36932605 |
ct |
36932606 |
T |
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