View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18411_high_3 (Length: 743)
Name: NF18411_high_3
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 186 - 437
Target Start/End: Complemental strand, 22191280 - 22191029
Alignment:
| Q |
186 |
aaataatgtcttacaatccataaaagagatacaaactctcataacaaaacatattgtatgcattacacaccacaaactgggtgaagcaaaagcaaaatgc |
285 |
Q |
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| T |
22191280 |
aaataaagtcttacaatccatcaaagagatacaaactctcataacaaaacatattgtatgcattacacaccacaaactgggtgaagcaaaagcaaaatgc |
22191181 |
T |
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| Q |
286 |
cttgaaccagtcacttatttagaagtttcacatgcctagaaaagaagtgccaaagcagaaattgaaaatgccgtagttataaacctattcatagtttata |
385 |
Q |
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| T |
22191180 |
cttgaaccagtcacttatttagaagtttcacatgcctagaaaagaagtgccaaagcagaaattgaaaatgccgtagttataaacctattgatagtttata |
22191081 |
T |
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| Q |
386 |
taatttattttctttgagagtacgttcctcagtgaaggtgaatcaataacaa |
437 |
Q |
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| T |
22191080 |
taatttattttctttgagagtaaggtcctcagtgaaggtgaatcaataacaa |
22191029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 600 - 671
Target Start/End: Complemental strand, 22191955 - 22191884
Alignment:
| Q |
600 |
agcctttggtcccgtttaattaagaaaataaaagtattcaatttggttcaaatttatactgacggtacaacc |
671 |
Q |
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| T |
22191955 |
agcctttggtccagtttaattaagaaaataaaagtagtcaatttggttcaaatttatactgatggtacaacc |
22191884 |
T |
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