View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18411_high_45 (Length: 228)

Name: NF18411_high_45
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18411_high_45
NF18411_high_45
[»] chr2 (1 HSPs)
chr2 (20-210)||(2433617-2433808)
[»] chr6 (1 HSPs)
chr6 (21-203)||(12438179-12438362)
[»] chr5 (2 HSPs)
chr5 (22-193)||(41654699-41654871)
chr5 (22-183)||(41647174-41647336)
[»] chr1 (2 HSPs)
chr1 (120-174)||(12636975-12637029)
chr1 (120-174)||(12609879-12609933)
[»] chr3 (3 HSPs)
chr3 (120-174)||(23145894-23145948)
chr3 (120-174)||(23036144-23036198)
chr3 (120-172)||(23039015-23039067)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 2433808 - 2433617
Alignment:
Q  20 acttcagtcatatccaaattttcatgagtaattccatagggaagtccccaatcaaaatagtacaacaattgagcaagaggaaattctaaattaggttcag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2433808 acttcagtcatatccaaattttcatgagtaattccatagggaagtccccaatcaaaatagtacaacaattgagcaagaggaaattctaaattaggttcag 2433709  T
Q  120 caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactc-aaattagaccctttgtaatcaactagacaatccatgaac 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2433708 caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaaattagaccctttgtaatcaactagacaatccatgaac 2433617  T

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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 12438179 - 12438362
Alignment:
Q  21 cttcagtcatatccaaattttcatgagtaattccatagggaagtccccaatcaaaatagtacaacaattgagcaagaggaaattctaaattaggttcagc 120  Q
    |||||||||| || |||||||||||| || ||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| | |  |  ||| ||    
T  12438179 cttcagtcatgtctaaattttcatgactagttccagagggaagtccccaatcaaaatagtacaacaactgagccagaggaaattccataccaacttcggc 12438278  T
Q  121 aaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactc-aaattagaccctttgtaatcaactagacaatc 203  Q
     ||   ||| || ||||| ||||| ||||| ||||||||||||||  |||| |||||||||||||||||||||| | |||||||    
T  12438279 gaacaagatgccgggacacattcttcttccagcaccaaaaggtataaactcgaaattagaccctttgtaatcaattggacaatc 12438362  T

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Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 193
Target Start/End: Complemental strand, 41654871 - 41654699
Alignment:
Q  22 ttcagtcatatccaaattttcatgagtaattccatagggaagtccccaatcaaaatagtacaacaattgagcaagaggaaattctaaattaggttcagca 121  Q
    ||||||||| || ||||||||||||||  ||||| |||| |||  |||||||||| | |||| ||| || |||||||||| ||||| | ||| | |||||    
T  41654871 ttcagtcatgtcaaaattttcatgagtggttccagaggggagtttccaatcaaaagaatacagcaactgtgcaagaggaagttctatactagatgcagca 41654772  T
Q  122 aatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactc-aaattagaccctttgtaatcaa 193  Q
    || | |||||| ||||| |||||| |||||||||||||||||||| |||| |||||||||||| || ||||||    
T  41654771 aaagagattccaggacacattctctttcctgcaccaaaaggtatgaactcaaaattagaccctctgaaatcaa 41654699  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 183
Target Start/End: Complemental strand, 41647336 - 41647174
Alignment:
Q  22 ttcagtcatatccaaattttcatgagtaattccatagggaagtccccaatcaaaatagtacaacaattgagcaagaggaaattctaaattaggttcagca 121  Q
    ||||||||| || ||||||||||||||  ||||| |||| |||  |||||||||| | |||| ||| || |||||||||| ||||| | ||| | |||||    
T  41647336 ttcagtcatgtcaaaattttcatgagtggttccagaggggagtttccaatcaaaagaatacagcaactgtgcaagaggaagttctatactagatgcagca 41647237  T
Q  122 aatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactc-aaattagaccct 183  Q
    || | |||||| ||||| |||||| |||||||||||||||||||| |||| ||||||||||||    
T  41647236 aaagagattccaggacacattctctttcctgcaccaaaaggtatgaactcaaaattagaccct 41647174  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 12636975 - 12637029
Alignment:
Q  120 caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaa 174  Q
    |||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||    
T  12636975 caaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaa 12637029  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 12609879 - 12609933
Alignment:
Q  120 caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaa 174  Q
    |||||||| | |||||||||||||| ||||| |||||||| || |||||||||||    
T  12609879 caaatgtgctacctggacatattcttcttccagcaccaaagggaatgtactcaaa 12609933  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 23145894 - 23145948
Alignment:
Q  120 caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaa 174  Q
    |||||||| | |||||||||||||| ||||| ||||||||||| |||||||||||    
T  23145894 caaatgtgctccctggacatattcttcttccagcaccaaaaggaatgtactcaaa 23145948  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 23036144 - 23036198
Alignment:
Q  120 caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaa 174  Q
    |||||||| | ||||| |||||||| ||||| ||||||||||| |||||||||||    
T  23036144 caaatgtgctccctgggcatattcttcttccggcaccaaaaggaatgtactcaaa 23036198  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 23039015 - 23039067
Alignment:
Q  120 caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactca 172  Q
    |||||||| | ||||| |||||||| ||||| ||||||||||| |||||||||    
T  23039015 caaatgtgctccctgggcatattcttcttccggcaccaaaaggaatgtactca 23039067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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