View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18411_high_46 (Length: 227)
Name: NF18411_high_46
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_high_46 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 7721715 - 7721489
Alignment:
| Q |
1 |
ccaatgctaaatccatctgtgctcttgatcatgaagttcataaatgcctgtattacatgaannnnnnnaacaaatgtctttagaacactagttaagaaaa |
100 |
Q |
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| T |
7721715 |
ccaatgctaaatccatctgtgctcttgatcatgaagttcataaatgcctgtattacatgaatttttttaacaaatatctttagaacactggttaaaaaaa |
7721616 |
T |
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| Q |
101 |
taaatatagtaatattacaacatagcttgtgtaatctaatttannnnnnngacaaagttatttgaatttctattggattttagtaaaattttaaataaga |
200 |
Q |
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| T |
7721615 |
caaatatagtaatattacaacatagcttgtgtgatctaatttatttttttgacaaagttatttgaatttctattcgattttagtaaaattttaaataaga |
7721516 |
T |
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| Q |
201 |
ggcctacaagggtttaagtttggtttt |
227 |
Q |
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| T |
7721515 |
ggcctacaagggtttaagtttggtttt |
7721489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7738129 - 7738076
Alignment:
| Q |
1 |
ccaatgctaaatccatctgtgctcttgatcatgaagttcataaatgcctgtatt |
54 |
Q |
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|||||||||||||||||||||||||| ||| ||| ||||| ||||||| |||| |
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| T |
7738129 |
ccaatgctaaatccatctgtgctctttctcaagaaattcatgaatgcctatatt |
7738076 |
T |
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