View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18411_high_49 (Length: 214)
Name: NF18411_high_49
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_high_49 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 39799342 - 39799519
Alignment:
| Q |
19 |
aaagaattagataagtgacaattgagttacaatttaatgtttctttaaattagttagtgaactcaaggacagacctgattagatttccgtctcgaagggt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39799342 |
aaagaattagataagtgacaattgagttacaatttaatgtttctttaaattggttagtgaactcaaggacagacctgattagatttccgtctcgaagggt |
39799441 |
T |
|
| Q |
119 |
tctgtaagtgatgattagaagaatctgcaaggatgctttgagacagttctatgcttctgcggatgcatctaaccatat |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39799442 |
tctgtaagtgatgattagaagaatctgcaaggatgctttgagacagttctatgcttctgcggatgcatctaaccatat |
39799519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University