View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18411_high_6 (Length: 563)

Name: NF18411_high_6
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18411_high_6
NF18411_high_6
[»] chr8 (14 HSPs)
chr8 (207-405)||(44301123-44301322)
chr8 (395-563)||(44301348-44301521)
chr8 (395-563)||(43896007-43896175)
chr8 (395-563)||(44306460-44306629)
chr8 (62-142)||(44300978-44301058)
chr8 (395-563)||(44312248-44312408)
chr8 (314-410)||(44312129-44312226)
chr8 (32-125)||(44311895-44311986)
chr8 (314-410)||(43895847-43895943)
chr8 (273-315)||(43895789-43895832)
chr8 (485-563)||(43895568-43895646)
chr8 (273-314)||(44306213-44306255)
chr8 (370-410)||(44306353-44306394)
chr8 (285-314)||(44312084-44312113)
[»] chr3 (2 HSPs)
chr3 (395-563)||(4084120-4084287)
chr3 (368-410)||(4084056-4084099)
[»] chr4 (1 HSPs)
chr4 (405-563)||(18701618-18701779)
[»] chr6 (1 HSPs)
chr6 (455-563)||(8159202-8159313)
[»] chr5 (1 HSPs)
chr5 (429-563)||(35856923-35857053)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 5e-82; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 207 - 405
Target Start/End: Original strand, 44301123 - 44301322
Alignment:
Q  207 aattatgttattttgcctctggaagttatcttcttaatcctgttttgcttttttgatcagtatggaggatcaaatcttacatgacatttgcactaaatgt 306  Q
    |||||||||||||||||||||||| |||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44301123 aattatgttattttgcctctggaaattatcttcttaaccttgttttgctttgttgatcagtatggaggatcaaatcttacatgacatttgcactaaatgt 44301222  T
Q  307 taaacttatcttgacagcatagataggatcaagtattaaatgcagaacaaaatnnnnnnnctgagtaactactaact-atcagagatcaataattaagca 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| ||||||||||||||||||||||    
T  44301223 taaacttatcttgacagcatagataggatcaagtattaaatgcagaacaaaataaaaaaactgagtaactactaactaatcagagatcaataattaagca 44301322  T

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Target: chr8; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 395 - 563
Target Start/End: Original strand, 44301348 - 44301521
Alignment:
Q  395 ataattaagcaacaaaacatagcaaagttaacagaccaaaccaactgggtaagtatgatcatttctc-----tggaatgaatcaattcacaccatttgaa 489  Q
    |||| |||||||||||||||||||||| |||||  |||||| ||||||||||||| ||||||||| |     ||||||||||||||||||||||||||||    
T  44301348 ataaataagcaacaaaacatagcaaagctaacaagccaaacaaactgggtaagtaggatcatttcactggaatggaatgaatcaattcacaccatttgaa 44301447  T
Q  490 aatttctctccagaatcctttgagaccgaataagcaggaacatcggcagcagtcattgtatatctaacagaccc 563  Q
    ||||||||||||||||| ||||| |||||||||| |||||||||||||| || |||||||||||||||||||||    
T  44301448 aatttctctccagaatcttttgacaccgaataagtaggaacatcggcagaagacattgtatatctaacagaccc 44301521  T

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Target: chr8; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 395 - 563
Target Start/End: Original strand, 43896007 - 43896175
Alignment:
Q  395 ataattaagcaacaaaacatagcaaagttaacagaccaaaccaactgggtaagtatgatcatttctctggaatgaatcaattcacaccatttgaaaattt 494  Q
    |||| ||||||||||| |||||||||| |||||  ||||| |||||||||||||| ||||| ||| || ||||||||| || ||||||||||||||||||    
T  43896007 ataaataagcaacaaaccatagcaaagctaacaagccaaagcaactgggtaagtaggatcacttccctagaatgaatccatccacaccatttgaaaattt 43896106  T
Q  495 ctctccagaatcctttgagaccgaataagcaggaacatcggcagcagtcattgtatatctaacagaccc 563  Q
    |||||||||||| | |||||  |||||| ||||||||||||||| ||||||||||||||||||||||||    
T  43896107 ctctccagaatcttatgagatagaataatcaggaacatcggcagaagtcattgtatatctaacagaccc 43896175  T

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Target: chr8; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 395 - 563
Target Start/End: Original strand, 44306460 - 44306629
Alignment:
Q  395 ataattaagcaacaaaacatagcaaagttaacagaccaaaccaactgggtaagtatgatcatttctctggaatgaatcaattcacaccatttg-aaaatt 493  Q
    |||| ||||||||||| |||||||||| |||||  ||||| |||||||||||||| ||||||||| || ||||||||| |||||||||||||| ||||      
T  44306460 ataaataagcaacaaaccatagcaaagctaacaagccaaagcaactgggtaagtaggatcatttccctagaatgaatccattcacaccatttgaaaaaac 44306559  T
Q  494 tctctccagaatcctttgagaccgaataagcaggaacatcggcagcagtcattgtatatctaacagaccc 563  Q
    ||||||||||||| | |||||| ||||||| |||||||||||||| ||||||||||||||||||||||||    
T  44306560 tctctccagaatcttatgagacagaataagtaggaacatcggcagaagtcattgtatatctaacagaccc 44306629  T

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Target: chr8; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 44300978 - 44301058
Alignment:
Q  62 aagcatgatgcggacactgcctaattaagtcattgcagatatattatgataaaatgtgcagttcatggatctatttcagat 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44300978 aagcatgatgcggacactgcctaattaagtcattgcagatatattatgataaaaagtgcagttcatggatctatttcagat 44301058  T

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Target: chr8; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 395 - 563
Target Start/End: Original strand, 44312248 - 44312408
Alignment:
Q  395 ataattaagcaacaaaacatagcaaagttaacagaccaaaccaactgggtaagtatgatcatttctctggaatgaatcaattcacaccatttgaaaattt 494  Q
    |||| ||||||||||| || |||| ||||||||  |||||||||||||  ||||| ||||| |||||| ||||||||| |||||||||||||||||||||    
T  44312248 ataaataagcaacaaaccaaagcatagttaacaagccaaaccaactggcgaagtaggatcaattctcttgaatgaatccattcacaccatttgaaaattt 44312347  T
Q  495 ctctccagaatcctttgagaccgaataagcaggaacatcggcagcagtcattgtatatctaacagaccc 563  Q
    |||||||||| | |||||||| ||        |||||||||||| ||||||| ||||||||||||||||    
T  44312348 ctctccagaaacttttgagacgga--------gaacatcggcagaagtcattatatatctaacagaccc 44312408  T

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Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 410
Target Start/End: Original strand, 44312129 - 44312226
Alignment:
Q  314 atcttgacagcatagataggatcaagtattaaatgcagaacaaaatnnnnnnnctgagtaactactaacta-tcagagatcaataattaagcaacaaa 410  Q
    |||||||||||| |||||||||||| | |||||||||||||| ||         ||||||||||||||||| ||||||||||||||||||||||||||    
T  44312129 atcttgacagcagagataggatcaactgttaaatgcagaacacaacaaaaaaaatgagtaactactaactaatcagagatcaataattaagcaacaaa 44312226  T

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Target: chr8; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 44311895 - 44311986
Alignment:
Q  32 aatagaaaacataataa-ctcgaacaatccaaagcatgatgcggacactgcctaattaagtcattgcagatatattatgataaaatgtgcagttc 125  Q
    |||| |||||||||||| ||||| ||||||| ||||||||||||||| |||||| ||||||||||||  |||||||||||| ||| |||||||||    
T  44311895 aatacaaaacataataaactcgagcaatccatagcatgatgcggacattgcctagttaagtcattgc--atatattatgattaaa-gtgcagttc 44311986  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 410
Target Start/End: Original strand, 43895847 - 43895943
Alignment:
Q  314 atcttgacagcatagataggatcaagtattaaatgcagaacaaaatnnnnnnnctgagtaactactaacta-tcagagatcaataattaagcaacaaa 410  Q
    |||||||| ||| ||||||||||| || |||||||||||||| |||        | |||||||||||| || ||||||||||||||||||||||||||    
T  43895847 atcttgacggcagagataggatcaggtgttaaatgcagaacacaataaaaaattt-agtaactactaaataatcagagatcaataattaagcaacaaa 43895943  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 43895789 - 43895832
Alignment:
Q  273 ggatcaaatctta-catgacatttgcactaaatgttaaacttat 315  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||    
T  43895789 ggatcaagtcttaacatgacatttgcactaaatgttaaacttat 43895832  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 563
Target Start/End: Original strand, 43895568 - 43895646
Alignment:
Q  485 ttgaaaatttctctccagaatcctttgagaccgaataagcaggaacatcggcagcagtcattgtatatctaacagaccc 563  Q
    ||||||||| | |||||||||| |||||||||||| ||| | ||| || | |||  ||||||| |||||||||||||||    
T  43895568 ttgaaaattgccctccagaatcttttgagaccgaacaagtaagaatattgacagaggtcattgaatatctaacagaccc 43895646  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 314
Target Start/End: Original strand, 44306213 - 44306255
Alignment:
Q  273 ggatcaaatctta-catgacatttgcactaaatgttaaactta 314  Q
    ||||||| ||||| |||||||||||||||||||||||||||||    
T  44306213 ggatcaagtcttaacatgacatttgcactaaatgttaaactta 44306255  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 44306353 - 44306394
Alignment:
Q  370 agtaactactaacta-tcagagatcaataattaagcaacaaa 410  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  44306353 agtaactactaaataatcagagatcaataattaagcaacaaa 44306394  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 314
Target Start/End: Original strand, 44312084 - 44312113
Alignment:
Q  285 acatgacatttgcactaaatgttaaactta 314  Q
    ||||||||||||||||||||||||||||||    
T  44312084 acatgacatttgcactaaatgttaaactta 44312113  T

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Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 395 - 563
Target Start/End: Original strand, 4084120 - 4084287
Alignment:
Q  395 ataattaagcaacaaaacatagcaaagttaacagaccaaaccaactgggtaagtatgatcatttctctggaatgaatcaattcacaccatttgaaaattt 494  Q
    |||| ||||||||||| ||||| |||| |||||  ||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  4084120 ataaataagcaacaaaccatagtaaagctaacaagccaaaccaactgg-taagtaggatcatttctctggaatgaatccattcacaccatttgaaaattt 4084218  T
Q  495 ctctccagaatcctttgagaccgaataagcaggaacatcggcagcagtcattgtatatctaacagaccc 563  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  4084219 ctctcctgaatcctttgagaccgaataagcaggaacatcggcagaagtcattgtatatctaatagaccc 4084287  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 368 - 410
Target Start/End: Original strand, 4084056 - 4084099
Alignment:
Q  368 tgagtaactactaacta-tcagagatcaataattaagcaacaaa 410  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  4084056 tgagtaactactaactaatcagagatcaataattaagcaacaaa 4084099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 405 - 563
Target Start/End: Original strand, 18701618 - 18701779
Alignment:
Q  405 aacaaaacatagcaaagttaacagaccaaaccaactgggtaagtatgatcatt---tctctggaatgaatcaattcacaccatttgaaaatttctctcca 501  Q
    |||||| ||| |||||| ||| | ||||||||||| ||||||||| |||||||   ||||| ||||||||||||||||||||||||||||| | |  ||     
T  18701618 aacaaaccattgcaaagctaataaaccaaaccaacagggtaagtaggatcattatttctctagaatgaatcaattcacaccatttgaaaatgtatgcccg 18701717  T
Q  502 gaatcctttgagaccgaataagcaggaacatcggcagcagtcattgtatatctaacagaccc 563  Q
    ||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  18701718 gaatcttttgagaccgaataagcaggaacatcagcagaagtcattgtatatctaacagaccc 18701779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 455 - 563
Target Start/End: Complemental strand, 8159313 - 8159202
Alignment:
Q  455 atttctctggaatgaatcaattcacaccatttgaaaatttctctccagaatcctttgagaccgaataagcaggaacatcggcagc---agtcattgtata 551  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||   ||||||| ||||    
T  8159313 atttctctagaatgaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcaggaacatcagcagcagaagtcattatata 8159214  T
Q  552 tctaacagaccc 563  Q
    ||||||||||||    
T  8159213 tctaacagaccc 8159202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 563
Target Start/End: Complemental strand, 35857053 - 35856923
Alignment:
Q  429 accaaaccaactgggtaagtatgatcatttctctggaatgaatcaattcacaccatttgaaaatttctctccagaatcctttgagaccgaataagcagga 528  Q
    ||||||||||||||||||||| |||||||||||||     |||| ||||||| |||||||| ||| ||| | |||||| ||||||||||||||| || ||    
T  35857053 accaaaccaactgggtaagtaggatcatttctctg----taatccattcacaacatttgaagattgctcgctagaatcttttgagaccgaataatcaaga 35856958  T
Q  529 acatcggcagcagtcattgtatatctaacagaccc 563  Q
    |||| ||||| |||||| |   |||||||||||||    
T  35856957 acattggcagaagtcatagcccatctaacagaccc 35856923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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