View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18411_high_7 (Length: 562)
Name: NF18411_high_7
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_high_7 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 538; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 9 - 562
Target Start/End: Original strand, 26354069 - 26354622
Alignment:
| Q |
9 |
acatcatcacaaaaattttgataattaagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26354069 |
acatcatcacaaaaattttgataattaagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaa |
26354168 |
T |
|
| Q |
109 |
catgagctctgtgtttccttgagctttcacttctcttccgcttcacaatgtttttaacaaaatcgacatgacccaatattgattgcctccaccacattgc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26354169 |
catgagctctgtgtttccttgagctttcacttctcttccgcttcacaatgtttttaacaaaatcgacatgacccaatattgattgcctccaccacattgc |
26354268 |
T |
|
| Q |
209 |
ataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagtttttccaagcaatgaatctagtc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
26354269 |
ataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagcctacaatagtttttccaagcaatgaatttagtc |
26354368 |
T |
|
| Q |
309 |
tcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaa |
408 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26354369 |
tcattaaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaa |
26354468 |
T |
|
| Q |
409 |
gctcagaaactctcaggcatataacaaatgagagcatttgtttatccaaatctttcttaaatggtactgaaattgcatcatttggataaaatacaccaca |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26354469 |
gctcagaaactctcaggcatataacaaatgagagcatttgtttatccaaatctttcttaaatggtaccgaaattgcatcatttggataaaatacaccaca |
26354568 |
T |
|
| Q |
509 |
ttcatctgcatatctaaaatatggacgccaaagaaaatcattgatagccaagtc |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26354569 |
ttcatctgcatatctaaaatatggacgccaaagaaaatcattgatagccaagtc |
26354622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 32 - 562
Target Start/End: Complemental strand, 9815987 - 9815457
Alignment:
| Q |
32 |
attaagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaacatgagctctgtgtttccttgag |
131 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| | ||||||| ||||||| ||||| |||||||| |
|
|
| T |
9815987 |
attaagaaggtcaacaagattgggaggaaattcaggtggaaaaccaacatcattacaacttctgtcaatttttcctacatgagatctgtacttccttgaa |
9815888 |
T |
|
| Q |
132 |
ctttcacttctcttccgcttcacaatgtttttaacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggttacatctgcct |
231 |
Q |
| |
|
|||| |||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| |||||||||||| ||| |||||||| |||||||||| |
|
|
| T |
9815887 |
ctttgacttctcttccgcttcacaatgttctgaacaaaatcgacatgacccaataccgattgcttccaccacattgtatatcgtgtggtaacatctgcct |
9815788 |
T |
|
| Q |
232 |
cataaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagtttttccaagcaatgaatctagtctcattgaatctaggcacataact |
331 |
Q |
| |
|
|| ||||||||||||| |||||||||| | |||| ||||||| |||||||||||||||||||| |||| | |||||||||||||||||||||||||| | |
|
|
| T |
9815787 |
caaaaagtcttggtggaaaatacaaattttgatcagatataagcctacaatagtttttccaagccatgagtttagtctcattgaatctaggcacataagt |
9815688 |
T |
|
| Q |
332 |
tggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaagctcagaaactctcaggcatata |
431 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||| |
|
|
| T |
9815687 |
tggaacatcttgatccatttcaaattgcatagcaactctatgtggcaaatactgctctatagagtcgaatccaacaagctcggaaactctcaagcatata |
9815588 |
T |
|
| Q |
432 |
acaaatgagagcatttgtttatccaaatctttcttaaatggtactgaaattgcatcatttggataaaatacaccacattcatctgcatatctaaaatatg |
531 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| || | ||| |||||||||||||||| |
|
|
| T |
9815587 |
acaaatgagagcattagcttatccaaatctttcttaaatggtaccaaaagcgcatcatttggataaaacacaccgcagttatcagcatatctaaaatatg |
9815488 |
T |
|
| Q |
532 |
gacgccaaagaaaatcattgatagccaagtc |
562 |
Q |
| |
|
|||||||||||||||||| |||||| |||| |
|
|
| T |
9815487 |
gacgccaaagaaaatcatccatagccgagtc |
9815457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 189 - 437
Target Start/End: Original strand, 38434911 - 38435159
Alignment:
| Q |
189 |
gattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagtttt |
288 |
Q |
| |
|
|||||| |||||||| |||||||||| |||| |||||||||||| | | ||||||||| |||||||||| | |||||||||| || || | ||||||| |
|
|
| T |
38434911 |
gattgcttccaccaccttgcataacgcttggtaacatctgcctcaaataatcttggtggaaaatacaaatttttatcaaatatgagactgcggtagtttt |
38435010 |
T |
|
| Q |
289 |
tccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctc |
388 |
Q |
| |
|
|| ||||||| || |||||||||| || ||| ||||||||||||||||||||||||| |||| ||||| ||||||| |||||||||| | ||| || || |
|
|
| T |
38435011 |
tctaagcaattgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattctaaattacatagcatctctatgtggtagatattgttc |
38435110 |
T |
|
| Q |
389 |
tatagagtcaaatccaacaagctcagaaactctcaggcatataacaaat |
437 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| |||| |||||||| |
|
|
| T |
38435111 |
aatagagtcaaatccaattagctaggaaactctcaagcatgtaacaaat |
38435159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 22)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 10 - 549
Target Start/End: Original strand, 20015344 - 20015883
Alignment:
| Q |
10 |
catcatcacaaaaattttgataattaagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaac |
109 |
Q |
| |
|
||||||| ||||| ||| ||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||| | |
|
|
| T |
20015344 |
catcatcgcaaaattttccatacttaagaaggtcaacaagattgggacaaaatccaggtggaacaccaacatcattactgcttctgttagtttttcctag |
20015443 |
T |
|
| Q |
110 |
atgagctctgtgtttccttgagctttcacttctcttccgcttcacaatgtttttaacaaaatcgacatgacccaatattgattgcctccaccacattgca |
209 |
Q |
| |
|
||||| ||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| |||||||||||||| |
|
|
| T |
20015444 |
atgaggtctatgtttccttgaactttcacttctcttccgcttcacaatgttcttaacaaaatctctgtgacccaataccgattgcttccaccacattgca |
20015543 |
T |
|
| Q |
210 |
taacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagtttttccaagcaatgaatctagtct |
309 |
Q |
| |
|
|||||||||| ||||||||||||| | ||||||||||| |||||||| | | ||||| ||||||| |||||||| | |||||||||| ||| | |||||| |
|
|
| T |
20015544 |
taacgtgtggctacatctgcctcaaagagtcttggtggaaaatacaagtttttatcagatataagcctacaataatatttccaagcagtgattttagtct |
20015643 |
T |
|
| Q |
310 |
cattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaag |
409 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20015644 |
cattgaatctaggcacatcacctggaacatcttgatccattccaaattgcatagcaactctgtgtggcaaatactgctctatagagtcaaatccaacaag |
20015743 |
T |
|
| Q |
410 |
ctcagaaactctcaggcatataacaaatgagagcatttgtttatccaaatctttcttaaatggtactgaaattgcatcatttggataaaatacaccacat |
509 |
Q |
| |
|
||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | | |||| |
|
|
| T |
20015744 |
ctcggaaactcttaagcatataacaaatgagagcatttgtttatccaaatctttcttaaatggtacaaaaaatgcatcatttggataaaacaaatcacac |
20015843 |
T |
|
| Q |
510 |
tcatctgcatatctaaaatatggacgccaaagaaaatcat |
549 |
Q |
| |
|
| ||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
20015844 |
ttatcagcatatctgaaatatggacgccaaagaaaatcat |
20015883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 34 - 549
Target Start/End: Complemental strand, 26647955 - 26647437
Alignment:
| Q |
34 |
taagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaacatgagctctgtgtttccttgagct |
133 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||| |||||||||||||||||| |||| ||||| |||||| ||| | |||| ||||||||||| || |
|
|
| T |
26647955 |
taagagtgtcaacaagattgggaggaaaaccagggggaacaccaacatcattaccacttatgttatcttttcctacacaaactctatgtttccttgaact |
26647856 |
T |
|
| Q |
134 |
ttcacttctcttccgcttcacaatgtttttaacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctca |
233 |
Q |
| |
|
| |||||| ||| || |||||| || |||||||||| || ||||||||| |||||| |||||||| |||||||||| || || |||||||||||| |
|
|
| T |
26647855 |
tgcacttcgtttcttctgcacaattttcataacaaaatcatcacgacccaatactgattgtttccaccaccttgcataacgggtagtaacatctgcctca |
26647756 |
T |
|
| Q |
234 |
taaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagtttttccaagcaatgaatctagtctcattgaatctaggcacataacttg |
333 |
Q |
| |
|
||| ||| | ||||||||||||| ||||| |||| ||||||| |||||||||||||||||| | ||||||||||||||| |||||||| ||| | |
|
|
| T |
26647755 |
aaaaatctcgatgggaaatacaaactcctatcagatatgcgtctacagtagtttttccaagcaatgtctttagtctcattgaatcgaggcacatcactcg |
26647656 |
T |
|
| Q |
334 |
gaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaagctcagaaactctcaggcatataac |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26647655 |
gaacatcttgatccattccaaattgcatagcaactctatgtggcagatactgttctatagagtcgaatccaacaagctcagaaactctcaagcatataac |
26647556 |
T |
|
| Q |
434 |
aaatgagagcatttgtttat---ccaaatctttcttaaatggtactgaaattgcatcatttggataaaatacaccacattcatctgcatatctaaaatat |
530 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||| |||||| |||||||||||||||| | |||| | ||| |||||||||| ||| |
|
|
| T |
26647555 |
aaatgagagcatttgttcatcaaccaaatctttcttaaatggtaccgaaatttcatcatttggataaaacaattcacacttatcagcatatctaacataa |
26647456 |
T |
|
| Q |
531 |
ggacgccaaagaaaatcat |
549 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
26647455 |
ggacgccaaagaaaatcat |
26647437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 9 - 549
Target Start/End: Complemental strand, 26654124 - 26653584
Alignment:
| Q |
9 |
acatcatcacaaaaattttgataattaagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaa |
108 |
Q |
| |
|
|||||| ||||||| ||| |||| || || |||||||||||||||||||||||||||||||||||| || ||| | |||| || ||| ||| || | |
|
|
| T |
26654124 |
acatcagcacaaaattttccataaatatgagtgtcaacaagattgggaggaaatccaggtggaacactaaaatcgacaccacttttgctagctttcccta |
26654025 |
T |
|
| Q |
109 |
catgagctctgtgtttccttgagctttcacttctcttccgcttcacaatgtttttaacaaaatcgacatgacccaatattgattgcctccaccacattgc |
208 |
Q |
| |
|
|||||||||| |||||||||| || ||||||||||||| ||||||||||| ||||||||||| |||||||||||| |||| |||||||| |||| |
|
|
| T |
26654024 |
catgagctctaggtttccttgaactcacacttctcttccgtttcacaatgttcttaacaaaatctccatgacccaataccagttgcttccaccactttgc |
26653925 |
T |
|
| Q |
209 |
ataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagtttttccaagcaatgaatctagtc |
308 |
Q |
| |
|
|||||| || | |||||||||||| | | |||||||| |||||||||| | ||| | | ||| | || || ||||||| |||||||||| || ||||| |
|
|
| T |
26653924 |
ataacgcatgatgacatctgcctcaaacaaccttggtggaaaatacaaatttttataagaaataggcctgcagtagttttcccaagcaatgtatttagtc |
26653825 |
T |
|
| Q |
309 |
tcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaa |
408 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||| | ||| ||||| ||||| ||||||||||| | |
|
|
| T |
26653824 |
tcattgaacctagccacataacttggaacatcttggtcaattccaaattgcatagcaactctatgtggaagatattgctcaatagactcaaatccaacta |
26653725 |
T |
|
| Q |
409 |
gctcagaaactctcaggcatataacaaatgagagcatttgtttatccaaatctttcttaaatggtactgaaattgcatcatttggataaaatacaccaca |
508 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||| | | |||||||||| |||||||||||||| ||||| ||| |||||||||||| | ||||| |
|
|
| T |
26653724 |
gctcagcaactctcaagcatataacaaatgagagcatgtttgtatccaaatccttcttaaatggtacccaaatttcattatttggataaaacattccaca |
26653625 |
T |
|
| Q |
509 |
ttcatctgcatatctaaaatatggacgccaaagaaaatcat |
549 |
Q |
| |
|
| | | |||||||| ||||||||||||||||||||||| |
|
|
| T |
26653624 |
cttgttaggatatctaacatatggacgccaaagaaaatcat |
26653584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 562
Target Start/End: Complemental strand, 19957059 - 19956507
Alignment:
| Q |
10 |
catcatcacaaaaattttgataattaagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaac |
109 |
Q |
| |
|
|||||||||||| ||||| | || ||||| | |||||||||||||||| |||||||||| |||||| ||| || || |||||||||| ||||| || |
|
|
| T |
19957059 |
catcatcacaaacattttcaaaagtaagagtatcaacaagattgggagaaaatccaggttgaacacaaacctccataccacttctgttaaactttcctac |
19956960 |
T |
|
| Q |
110 |
atgagctctgtgtttccttgagctttcacttctcttccgcttcacaatgtttttaacaaaatcgacatgacccaatattgattgcctccaccacattgca |
209 |
Q |
| |
|
|||| ||| | |||||||| ||| |||||||||||| |||||| || || |||||| | | ||| |||| ||||||| ||||||| ||||| |
|
|
| T |
19956959 |
gtgaggtctacgcttccttgaacttgaacttctcttccgacgcacaattttcttcccaaaattgtcgtgaggaaatactgattgcacccaccaccttgca |
19956860 |
T |
|
| Q |
210 |
taacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagtttttccaagcaatgaatctagtct |
309 |
Q |
| |
|
||||||||||| |||||||||||| | | ||||||||| |||||||| | | ||||| |||| |||| || |||||||||||||||||| || |||||| |
|
|
| T |
19956859 |
taacgtgtggtaacatctgcctcaaataatcttggtggaaaatacaagtttttatcatatatgggtctgcagtagtttttccaagcaatgtatttagtct |
19956760 |
T |
|
| Q |
310 |
cattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaag |
409 |
Q |
| |
|
||||||| |||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||||||| || |
|
|
| T |
19956759 |
cattgaacctagctacataacccggaacatcttgatcaattccaaattgcatagcaactctatgtggaagatattgctctatagactcaaatccaaccag |
19956660 |
T |
|
| Q |
410 |
ctcagaaactctcaggcatataacaaatgagagcatttgtttatccaaatctttcttaaatggtactgaaattgcatcatttggataaaatacaccacat |
509 |
Q |
| |
|
||| |||||||||| ||||||||||||||||| |||| | |||||||||| |||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
19956659 |
ctcggaaactctcaagcatataacaaatgagataatttttgtatccaaatccttcttaaatggtaccaaaatttcatcatttggataaaatagcccacat |
19956560 |
T |
|
| Q |
510 |
tcatctgcatatctaaaatatggacgccaaagaaaatcattgatagccaagtc |
562 |
Q |
| |
|
| || | ||||| || |||||||||||||||||| |||| |||||| |||| |
|
|
| T |
19956559 |
ttatgagaatatcgaacatatggacgccaaagaaagtcatccatagccgagtc |
19956507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 42 - 562
Target Start/End: Complemental strand, 19839336 - 19838816
Alignment:
| Q |
42 |
tcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaacatgagctctgtgtttccttgagctttcacttc |
141 |
Q |
| |
|
||||| |||||||||| |||||||||| |||||| ||| ||| || |||| ||||| ||||| ||||||| ||| | |||||||| ||| ||||| |
|
|
| T |
19839336 |
tcaaccagattgggagaaaatccaggttgaacacaaacctcaataccacttatgttaaactttcctacatgaggtctacgcttccttgaacttgaacttc |
19839237 |
T |
|
| Q |
142 |
tcttccgcttcacaatgtttttaacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtct |
241 |
Q |
| |
|
|||||| |||||| || || |||||||| | ||| |||| |||||| |||||||| ||||||||||| |||| |||||||||||| | | ||| |
|
|
| T |
19839236 |
tcttccaacgcacaatattcttctcaaaatcgtcgtgaggaaatactgattgtatccaccaccttgcataacgtatggtaacatctgcctcaaataatct |
19839137 |
T |
|
| Q |
242 |
tggtgggaaatacaaatctgtatcaaatataagtctacaatagtttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatct |
341 |
Q |
| |
|
|||||| |||||||| | | ||||| |||| |||| ||||||||||||||||||||| || ||||| ||||||| |||| |||||||| |||||||||| |
|
|
| T |
19839136 |
tggtggaaaatacaagtttttatcatatatgggtctgcaatagtttttccaagcaatgtatttagtcacattgaacctagccacataacctggaacatct |
19839037 |
T |
|
| Q |
342 |
tgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaagctcagaaactctcaggcatataacaaatgaga |
441 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| | ||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
19839036 |
tgatccattccgaattgcatagcaactctatgtggaagatattgctctatagactcaaatccaacaagctcggaaactctaaggcatataacaaatgaga |
19838937 |
T |
|
| Q |
442 |
gcatttgtttatccaaatctttcttaaatggtactgaaattgcatcatttggataaaatacaccacattcatctgcatatctaaaatatggacgccaaag |
541 |
Q |
| |
|
|||| | |||| ||||| ||||||||||||| ||||| |||||||||||||||| | |||| | ||| | ||||| || ||||||||||||||| |
|
|
| T |
19838936 |
taatttttgtatctaaatccctcttaaatggtaccaaaatttcatcatttggataaaacagttcacacttatcagaatatcgaacatatggacgccaaag |
19838837 |
T |
|
| Q |
542 |
aaaatcattgatagccaagtc |
562 |
Q |
| |
|
||| |||| |||||| |||| |
|
|
| T |
19838836 |
aaagtcatccatagccgagtc |
19838816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 42 - 549
Target Start/End: Complemental strand, 19813226 - 19812719
Alignment:
| Q |
42 |
tcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaacatgagctctgtgtttccttgagctttcacttc |
141 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| || || || || |||||||| | |||||| ||||| | || |||||| ||||| || ||||| |
|
|
| T |
19813226 |
tcaacaagattgggaggaaattcaggtggaacagcagcaccaataccacttctgtcaaattttcctacatgtggtcggtgttttcttgaactggaacttc |
19813127 |
T |
|
| Q |
142 |
tcttccgcttcacaatgtttttaacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtct |
241 |
Q |
| |
|
| ||||| |||||| || |||||||||||| | | || || | ||||| |||||||| | ||||| | ||||| |||||||||||| ||||||| |
|
|
| T |
19813126 |
ttttccgacgcacaatattgttaacaaaatcgtcgcgtcctaaaacaaattgcttccaccacttgacataatgcgtggtaacatctgcctcaaaaagtct |
19813027 |
T |
|
| Q |
242 |
tggtgggaaatacaaatctgtatcaaatataagtctacaatagtttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatct |
341 |
Q |
| |
|
|||||| |||||||| | | ||||| |||| || || || ||||||||||| ||||| | | |||| | |||||| |||||||||||||||||||||||| |
|
|
| T |
19813026 |
tggtggaaaatacaattttttatcagatatgagcctgcagtagtttttccatgcaatcactttagttttattgaacctaggcacataacttggaacatct |
19812927 |
T |
|
| Q |
342 |
tgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaagctcagaaactctcaggcatataacaaatgaga |
441 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| | ||| |||||||||||||| | ||||| ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
19812926 |
tgatcaattccaaattgcatagcaactctatgtggaagatattgctctatagagtcgataccaactagctcagaacatctcaagcatataacaaatgaga |
19812827 |
T |
|
| Q |
442 |
gcatttgtttatccaaatctttcttaaatggtactgaaattgcatcatttggataaaatacaccacattcatctgcatatctaaaatatggacgccaaag |
541 |
Q |
| |
|
|||||| ||||| |||||| | || |||||||| |||||| |||||||||||||||| | |||| | ||| |||||||||| ||||||||||||||| |
|
|
| T |
19812826 |
gcattttgttatctaaatctattttgaatggtaccgaaatttcatcatttggataaaacaatgcacacttatcggcatatctaacatatggacgccaaag |
19812727 |
T |
|
| Q |
542 |
aaaatcat |
549 |
Q |
| |
|
|||||||| |
|
|
| T |
19812726 |
aaaatcat |
19812719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 34 - 499
Target Start/End: Original strand, 20033501 - 20033969
Alignment:
| Q |
34 |
taagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaacatgagctctgtgtttccttgagct |
133 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||| |||||||| ||||| ||||| ||||| | | ||| ||| ||| ||||| || |
|
|
| T |
20033501 |
taagagtgtcaacaagattgggaggaaatccaggtgcaacaccatcatcattactactttcgttagcatttcctatacgaggtctacattttcttgaact |
20033600 |
T |
|
| Q |
134 |
ttcacttctcttccgcttcacaatgtttttaacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctca |
233 |
Q |
| |
|
| |||||||||| || || ||| || || ||||||| | || |||| || ||||||| ||||||| |||||||||| ||||| |||||||||||| |
|
|
| T |
20033601 |
tgcacttctcttatgccgcataatattcttcacaaaattgtcacagcccactactgattgcttccaccagtttgcataacgcgtggtaacatctgcctca |
20033700 |
T |
|
| Q |
234 |
taaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagtttttccaagcaatgaatctagtctcattgaatctaggcacataacttg |
333 |
Q |
| |
|
| | ||||||||| |||||||||| | |||| | || | | ||| |||||| |||||||| | | ||||||| ||||| |||||||||||||||| |
|
|
| T |
20033701 |
aataatcttggtggaaaatacaaattttcatcagagatgggccgacagtagtttctccaagcattctctttagtctcgttgaacctaggcacataacttg |
20033800 |
T |
|
| Q |
334 |
gaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaagctcagaaactctcaggcatataac |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| | ||||| ||||||| ||||||| ||||||||| |
|
|
| T |
20033801 |
gaacatcttgatccattccaaattgcatagcaactctatgtggaagatattgctctatagagtcgataccaacttgctcagacactctcatgcatataac |
20033900 |
T |
|
| Q |
434 |
aaatgagagcatttgtttat---ccaaatctttcttaaatggtactgaaattgcatcatttggataaaa |
499 |
Q |
| |
|
|||||| |||||||||| || ||||||| ||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
20033901 |
aaatgacagcatttgttgatccaccaaatcattcttaaatggtactgaaatttcatcattcggataaaa |
20033969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 196 - 549
Target Start/End: Complemental strand, 19819349 - 19818996
Alignment:
| Q |
196 |
tccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagtttttccaagc |
295 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| | | ||||||||| |||||||| | | ||||| |||| | || || |||||||||||||| |
|
|
| T |
19819349 |
tccaccaccttgcataacgtgtggtaacatctgcctcaaataatcttggtggaaaatacaagtttttatcagatattggcctgcagtagtttttccaagc |
19819250 |
T |
|
| Q |
296 |
aatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagag |
395 |
Q |
| |
|
|||| || ||||||||||||| |||| |||||||| |||||||||||||| |||||||| |||||||||||||||||||| | ||| |||||||| || |
|
|
| T |
19819249 |
aatgtatttagtctcattgaacctagccacataaccaggaacatcttgatcaattccaaactgcatagcaactctatgtggaagatattgctctatggac |
19819150 |
T |
|
| Q |
396 |
tcaaatccaacaagctcagaaactctcaggcatataacaaatgagagcatttgtttatccaaatctttcttaaatggtactgaaattgcatcatttggat |
495 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||| |||| | |||||||||| ||||||||||||| ||||| ||||||| |||| |
|
|
| T |
19819149 |
tcaaaaccaacaagctcagaaactctcaaacatataacaaatgagagaatttttgtatccaaatccatcttaaatggtaccaaaattccatcattcggat |
19819050 |
T |
|
| Q |
496 |
aaaatacaccacattcatctgcatatctaaaatatggacgccaaagaaaatcat |
549 |
Q |
| |
|
|||| | |||| | ||| | ||||| || |||||||||||||||||| |||| |
|
|
| T |
19819049 |
aaaacagctcacacttatcagaatatcgaacatatggacgccaaagaaagtcat |
19818996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 50 - 548
Target Start/End: Complemental strand, 19952059 - 19951558
Alignment:
| Q |
50 |
attgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaacatgagctctgtgtttccttgagctttcacttctcttccgc |
149 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||| |||| |||||| |||||| ||||||| ||| | ||| |||| ||| | |||| ||| || |
|
|
| T |
19952059 |
attggtaggaaatccaggtggaacaccaacaacattaccacttatgttagcttttcctacatgaggtctatcttttcttggacttggagttcttttctgc |
19951960 |
T |
|
| Q |
150 |
ttcacaatgtttttaacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtggga |
249 |
Q |
| |
|
| |||||| || |||||||||| | |||||| ||||||| ||||||| |||||||||| || | |||| |||||| ||| | ||| ||| | |
|
|
| T |
19951959 |
tgcacaatattcttaacaaaatttctgcaatccaatactgattgctcccaccactttgcataacgcatgctagcatcagcctcaaaaatttttgatggaa |
19951860 |
T |
|
| Q |
250 |
aatacaaatctgtatcaaatataagtctacaatagtttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccat |
349 |
Q |
| |
|
||||||||| | ||||| |||| | || || ||||||||||||||||| | | |||| | |||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
19951859 |
aatacaaatttttatcagatatgggcctgcagtagtttttccaagcaatcactttagttttattgaacctaggcacataactcggaacatcttgatccat |
19951760 |
T |
|
| Q |
350 |
tccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaagctcagaaactctcaggcatataacaaatgagagcatttgt |
449 |
Q |
| |
|
| ||||||||||||||||||||||||| | ||| |||||||||||||| | ||||| |||||||||||||||| ||||||||||||||| | ||||||| |
|
|
| T |
19951759 |
tgcaaattgcatagcaactctatgtggaagatattgctctatagagtcgataccaactagctcagaaactctcaagcatataacaaatgacaacatttgt |
19951660 |
T |
|
| Q |
450 |
ttat---ccaaatctttcttaaatggtactgaaattgcatcatttggataaaatacaccacattcatctgcatatctaaaatatggacgccaaagaaaat |
546 |
Q |
| |
|
| || ||||||||||||||||||| || ||||| | ||||| |||||||| | ||||| | ||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
19951659 |
tgatccaccaaatctttcttaaatggcaccaaaatttcttcattcggataaaacattccacacttatcagcatatctaacatatggacgccaaataaaat |
19951560 |
T |
|
| Q |
547 |
ca |
548 |
Q |
| |
|
|| |
|
|
| T |
19951559 |
ca |
19951558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 191 - 562
Target Start/End: Complemental strand, 19832664 - 19832292
Alignment:
| Q |
191 |
ttgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagtttttc |
290 |
Q |
| |
|
|||| |||||||| |||||||||||||||| |||||||||||| | | ||||||||| |||||||| | | ||||| |||| | || || ||||||||| |
|
|
| T |
19832664 |
ttgcttccaccaccttgcataacgtgtggtaacatctgcctcaaataatcttggtggaaaatacaagtttttatcagatattggcctgcagtagtttttc |
19832565 |
T |
|
| Q |
291 |
caagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctcta |
390 |
Q |
| |
|
||||||||| || ||||||||||||| |||| |||||||| |||||||||||||| ||||||| |||||||||||||||||||| | ||| ||||||| |
|
|
| T |
19832564 |
caagcaatgtatttagtctcattgaacctagccacataaccaggaacatcttgatcaattccaatctgcatagcaactctatgtggaagatattgctcta |
19832465 |
T |
|
| Q |
391 |
tagagtcaaatccaacaagctcagaaactctcaggcatataacaaatgagagcatttgtt-tatccaaatctttcttaaatggtactgaaattgcatcat |
489 |
Q |
| |
|
| || ||||| |||||||||||||||||||||| ||||||||||||||||| |||| || |||||||||| ||||||||||||| ||||| |||||| |
|
|
| T |
19832464 |
tggactcaaaaccaacaagctcagaaactctcaaacatataacaaatgagagaattttttgtatccaaatccatcttaaatggtaccaaaattccatcat |
19832365 |
T |
|
| Q |
490 |
ttggataaaatacaccacattcatctgcatatctaaaatatggacgccaaagaaaatcattgatagccaagtc |
562 |
Q |
| |
|
| |||||||| | |||| | ||| | ||||| || |||||||||||||||||| |||| |||||||||| |
|
|
| T |
19832364 |
tcggataaaacagctcacacttatcagaatatcgaacatatggacgccaaagaaagtcatccttagccaagtc |
19832292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 42 - 339
Target Start/End: Original strand, 20007447 - 20007744
Alignment:
| Q |
42 |
tcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaacatgagctctgtgtttccttgagctttcacttc |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||| || ||| ||||||| ||| ||| ||||||| || |||||| |
|
|
| T |
20007447 |
tcaacaagattgggaggaaatccaggtggaacaccaacatcaatccaacttctgttagattgtcctacatgagatctatgtctccttgaaattgcacttc |
20007546 |
T |
|
| Q |
142 |
tcttccgcttcacaatgtttttaacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtct |
241 |
Q |
| |
|
||||||||||||||| ||| |||||||||||| |||||||||||| |||| |||||||| ||||||| |||||| |||| |||||||| || ||| |
|
|
| T |
20007547 |
tcttccgcttcacaacgttcttaacaaaatcgccatgacccaataccacttgcttccaccactttgcatatcgtgtgcgtacagctgcctcaaaatatct |
20007646 |
T |
|
| Q |
242 |
tggtgggaaatacaaatctgtatcaaatataagtctacaatagtttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacat |
339 |
Q |
| |
|
|||||| |||||||||| | ||||| ||||||| ||| ||||||| ||||||||||||||| ||||||||||||| |||||||||| | ||||||||| |
|
|
| T |
20007647 |
tggtggaaaatacaaatttttatcagatataagcctaaaatagttcttccaagcaatgaatttagtctcattgaacctaggcacattagttggaacat |
20007744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 10 - 498
Target Start/End: Original strand, 20035746 - 20036234
Alignment:
| Q |
10 |
catcatcacaaaaattttgataattaagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaac |
109 |
Q |
| |
|
|||||||||||| |||| | || ||||| | |||||||||||||||| ||||||||| |||||| ||| ||| || |||| |||| |||||| || |
|
|
| T |
20035746 |
catcatcacaaacatttccaaaaataagagtatcaacaagattgggagaaaatccaggctgaacacaaacttcaataccacttttgtttaattttcctac |
20035845 |
T |
|
| Q |
110 |
atgagctctgtgtttccttgagctttcacttctcttccgcttcacaatgtttttaacaaaatcgacatgacccaatattgattgcctccaccacattgca |
209 |
Q |
| |
|
||| | |||||||| ||||| || |||||| ||||| |||||| || ||||||||| || | ||||| |||| ||||| ||||| || | || |
|
|
| T |
20035846 |
atgtggtctgtgttgtcttgaactggaacttcttttccgacgcacaatattgttaacaaaaacgtcgtgacctaatacaaattgcttccactacttgaca |
20035945 |
T |
|
| Q |
210 |
taacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagtttttccaagcaatgaatctagtct |
309 |
Q |
| |
|
|||| |||||| |||||||||||| ||||||||||||| |||||||| | | ||||| |||| || || || |||||| |||||||||| | | |||| | |
|
|
| T |
20035946 |
taacatgtggtaacatctgcctcaaaaagtcttggtggaaaatacaattttttatcagatatgagcctgcagtagtttctccaagcaatcactttagttt |
20036045 |
T |
|
| Q |
310 |
cattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaag |
409 |
Q |
| |
|
|||| | |||| ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||||||| || |
|
|
| T |
20036046 |
tattgcacctagccacgtaactcggaacatcttgatcaattccaaattgcatagcaactctatgtggaagatattgctctatagactcaaatccaaccag |
20036145 |
T |
|
| Q |
410 |
ctcagaaactctcaggcatataacaaatgagagcatttgtttatccaaatctttcttaaatggtactgaaattgcatcatttggataaa |
498 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| |||| | ||||||||| ||| |||||||||| || || ||||||||||||||| |
|
|
| T |
20036146 |
ctcagaaaccctcaagcatataacaaatgagataatttttgtatccaaatacttcgtaaatggtaccaaagtttcatcatttggataaa |
20036234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 136 - 549
Target Start/End: Complemental strand, 20046969 - 20046556
Alignment:
| Q |
136 |
cacttctcttccgcttcacaatgtttttaacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctcata |
235 |
Q |
| |
|
||||||| ||||| |||||||| || | ||| ||||| || ||||||| | |||||| |||||||| || ||||||| |||| |||||||||||| | |
|
|
| T |
20046969 |
cacttctattccgattcacaattttctcaacgaaatctccacgacccaacaccgattgcttccaccactttacataacgcatggtaacatctgcctcaaa |
20046870 |
T |
|
| Q |
236 |
aagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagtttttccaagcaatgaatctagtctcattgaatctaggcacataacttgga |
335 |
Q |
| |
|
| ||||||||| |||||||||| | ||||| | || | || || ||||| ||||||||| | | | | | ||| | || ||||||||||| ||| |
|
|
| T |
20046869 |
caatcttggtggaaaatacaaatttttatcagacatgggcctgcagtagttgttccaagcagtagactttctattgttgcaccttggcacataactcgga |
20046770 |
T |
|
| Q |
336 |
acatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaagctcagaaactctcaggcatataacaa |
435 |
Q |
| |
|
|||||||| || | |||||||||||||| |||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
20046769 |
acatcttggtcaagtccaaattgcatagaaactctatgtggaagatactgctctatagactcaaatccaacaagctcagaaactctcaggcatatagaaa |
20046670 |
T |
|
| Q |
436 |
atgagagcatttgtttatccaaatctttcttaaatggtactgaaattgcatcatttggataaaatacaccacattcatctgcatatctaaaatatggacg |
535 |
Q |
| |
|
|||| || |||| |||||||||||| |||||||||||||| ||||| | | |||||||||||| | ||||| | || | |||||||| ||||||||| |
|
|
| T |
20046669 |
atgaaagtatttttttatccaaatccttcttaaatggtacccaaatttcgttatttggataaaaaattccacacttgtcaggatatctaacatatggacg |
20046570 |
T |
|
| Q |
536 |
ccaaagaaaatcat |
549 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
20046569 |
ccaaagaaaatcat |
20046556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 56 - 562
Target Start/End: Complemental strand, 19849925 - 19849419
Alignment:
| Q |
56 |
aggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaacatgagctctgtgtttccttgagctttcacttctcttccgcttcaca |
155 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| ||||||||||| |||||| ||| | ||| ||||| ||||| ||| |||||||||| || |||| |
|
|
| T |
19849925 |
aggaaatccaagtggaaaaccaacatcattaccacttctgttagcttttcctacacaatgtctttgttttcttgaacttgcacttctctttcgacgcaca |
19849826 |
T |
|
| Q |
156 |
atgtttttaacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaataca |
255 |
Q |
| |
|
| || ||||||||||| |||||||| || ||| |||||||| ||||||||||| ||| ||||| ||||| |||| || ||||| ||||||| |
|
|
| T |
19849825 |
actttcttaacaaaatcattgcaacccaataccgagtgcttccaccactttgcataacgtacggtaacatcagcctcgaaaagcctcggtggaaaataca |
19849726 |
T |
|
| Q |
256 |
aatctgtatcaaatataagtctacaatagtttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaa |
355 |
Q |
| |
|
|| | ||||| | |||| |||||||||| |||||||||| | |||| ||||| || || |||||||||||||||||||||||||||||||| || |
|
|
| T |
19849725 |
aacgtttatcatggacgggtctgcaatagttttgccaagcaatgtctttagtatcatttaacctcggcacataacttggaacatcttgatccattccgaa |
19849626 |
T |
|
| Q |
356 |
ttgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaagctcagaaactctcaggcatataacaaatgagagcatttgtttatcc |
455 |
Q |
| |
|
||||| || ||||||||||| | ||| ||||||||||| |||||||||| |||||||||||||||| ||| |||||||||| || |||| |||||| |
|
|
| T |
19849625 |
ttgcaaagagactctatgtgggagatattgctctatagactcaaatccaatgagctcagaaactctcaaacatgtaacaaatgaaagtatttctttatct |
19849526 |
T |
|
| Q |
456 |
aaatctttcttaaatggtactgaaattgcatcatttggataaaatacaccacattcatctgcatatctaaaatatggacgccaaagaaaatcattgatag |
555 |
Q |
| |
|
||||||||| ||| || ||||| |||||||||||||||| | ||| | | || ||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
19849525 |
gaatctttctcaaacaacacccaaattccatcatttggataaaacattccataattatgagcatatctagcatatggacgccaaagaaaatcatccatag |
19849426 |
T |
|
| Q |
556 |
ccaagtc |
562 |
Q |
| |
|
|| |||| |
|
|
| T |
19849425 |
ccgagtc |
19849419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 285 - 549
Target Start/End: Original strand, 24839392 - 24839659
Alignment:
| Q |
285 |
tttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatact |
384 |
Q |
| |
|
||||||||||||||| | |||||||||||| ||||| |||||||| |||||||||||||| | ||| ||||||||||||||||||||||| | ||| | |
|
|
| T |
24839392 |
tttttccaagcaatggctttagtctcattgagtctagacacataaccaggaacatcttgatcaaatccgaattgcatagcaactctatgtggtagatatt |
24839491 |
T |
|
| Q |
385 |
gctctatagagtcaaatccaacaagctcagaaactctcaggcatataacaaatgagagcatttgtt-ta--tccaaatctttcttaaatggtactgaaat |
481 |
Q |
| |
|
| |||||||| ||||||||||| |||||||||||||||| | |||||||||||||||||||||||| || |||||||||||||||||||||| || | |
|
|
| T |
24839492 |
gttctatagactcaaatccaactagctcagaaactctcaagaatataacaaatgagagcatttgttctactaccaaatctttcttaaatggtaccaaagt |
24839591 |
T |
|
| Q |
482 |
tgcatcatttggataaaatacaccacattcatctgcatatctaaaatatggacgccaaagaaaatcat |
549 |
Q |
| |
|
| |||| ||||||||||| || ||||| | ||| ||||| || ||| |||||||||| |||||||| |
|
|
| T |
24839592 |
ttcatcctttggataaaacactccacacttatcaacatattgaacataaggacgccaaataaaatcat |
24839659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 285 - 562
Target Start/End: Complemental strand, 19858772 - 19858492
Alignment:
| Q |
285 |
tttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatact |
384 |
Q |
| |
|
|||||||||||||||| | || ||||||||||||| |||||||| |||||||||||||| | | ||||||||||||||||||||||||| | ||| | |
|
|
| T |
19858772 |
tttttccaagcaatgacttgagattcattgaatctagacacataaccaggaacatcttgatcaaattcaaattgcatagcaactctatgtggtagatatt |
19858673 |
T |
|
| Q |
385 |
gctctatagagtcaaatccaacaagctcagaaactctcaggcatataacaaatgagagcatttgtttat---ccaaatctttcttaaatggtactgaaat |
481 |
Q |
| |
|
|||||||| | ||||| ||||| |||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||| | ||| ||| |||| |
|
|
| T |
19858672 |
gctctataaactcaaacccaactagctcagaaactctcaaacatataataaatgagagcatttgtttatcgaccaaatctttctaatatgatacccaaat |
19858573 |
T |
|
| Q |
482 |
tgcatcatttggataaaatacaccacattcatctgcatatctaaaatatggacgccaaagaaaatcattgatagccaagtc |
562 |
Q |
| |
|
| | |||||||||||||| | ||||| | |||||||||||||| || |||||||||| |||||||| |||||| |||| |
|
|
| T |
19858572 |
ttcgtcatttggataaaacagtccacacttatctgcatatctaacgtaaggacgccaaataaaatcatcaatagccgagtc |
19858492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 285 - 549
Target Start/End: Complemental strand, 19854200 - 19853933
Alignment:
| Q |
285 |
tttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatact |
384 |
Q |
| |
|
|||||||| ||||||| | ||||||||||| ||| | |||||||| |||||||||||||| | |||||||||| |||||||||||||||| | ||| | |
|
|
| T |
19854200 |
tttttccatgcaatgacttgagtctcattgagtctggacacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatatt |
19854101 |
T |
|
| Q |
385 |
gctctatagagtcaaatccaacaagctcagaaactctcaggcatataacaaatgagagcatttgtttat---ccaaatctttcttaaatggtactgaaat |
481 |
Q |
| |
|
|||||||| | ||||| ||||| |||||||||||||||| |||| | |||||| ||||||||||||||| ||||||| |||||||||||||| ||| |
|
|
| T |
19854100 |
gctctataaactcaaacccaactagctcagaaactctcaagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggtacccgaat |
19854001 |
T |
|
| Q |
482 |
tgcatcatttggataaaatacaccacattcatctgcatatctaaaatatggacgccaaagaaaatcat |
549 |
Q |
| |
|
| ||||||| || ||||| | ||||| | || ||||| |||| ||| |||||||||| |||||||| |
|
|
| T |
19854000 |
ttcatcattcgggtaaaacattccacacttatgagcatagctaacataaggacgccaaataaaatcat |
19853933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 333 - 556
Target Start/End: Complemental strand, 19944369 - 19944143
Alignment:
| Q |
333 |
ggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaagctcagaaactctcaggcatataa |
432 |
Q |
| |
|
|||||||||||||| | ||| ||||||||||||||||||| ||| | ||| || |||||||| ||||||||||| ||||| |||||||||| | |||||| |
|
|
| T |
19944369 |
ggaacatcttgatcaaatccgaattgcatagcaactctatatggtagatattgttctatagactcaaatccaactagctcggaaactctcaagaatataa |
19944270 |
T |
|
| Q |
433 |
caaatgagagcatttgtt-ta--tccaaatctttcttaaatggtactgaaattgcatcatttggataaaatacaccacattcatctgcatatctaaaata |
529 |
Q |
| |
|
|||||||||||||||||| || |||||||||| ||||||||||| || || |||||||||||||| |||| ||||| | ||| |||||| || ||| |
|
|
| T |
19944269 |
caaatgagagcatttgttctactaccaaatcttttttaaatggtaccaaagtttcatcatttggataatatactccacacttatcagcatattgaacata |
19944170 |
T |
|
| Q |
530 |
tggacgccaaagaaaatcattgatagc |
556 |
Q |
| |
|
||||| |||| ||||||||||||||| |
|
|
| T |
19944169 |
aggacggcaaataaaatcattgatagc |
19944143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 305 - 546
Target Start/End: Complemental strand, 19990205 - 19989967
Alignment:
| Q |
305 |
agtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatcca |
404 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||| | ||| || ||| | |||||| |||| |
|
|
| T |
19990205 |
agtctcattgaacctaggcacgtaacttggaatatcttgatccattccaaattgcaaagcaactctatgtgggagatattgaactacaaagtcaattcca |
19990106 |
T |
|
| Q |
405 |
acaagctcagaaactctcaggcatataacaaatgagagcatttgtttatccaaatctttcttaaatggtactgaaattgcatcatttggataaaatacac |
504 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| |||||| | ||||||||| ||||||| ||| || || |||||||||||||||| | |
|
|
| T |
19990105 |
acaagctcagaaactctcatacatctaacaaatgacagcattgtgtcatccaaatcagtcttaaa---tacccaagttccatcatttggataaaacagtt |
19990009 |
T |
|
| Q |
505 |
cacattcatctgcatatctaaaatatggacgccaaagaaaat |
546 |
Q |
| |
|
|||| | || ||| |||||| |||||||||||||||||||| |
|
|
| T |
19990008 |
cacacttctcagcaaatctaacatatggacgccaaagaaaat |
19989967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 387 - 562
Target Start/End: Complemental strand, 17115311 - 17115136
Alignment:
| Q |
387 |
tctatagagtcaaatccaacaagctcagaaactctcaggcatataacaaatgagagcatttgtttatccaaatctttcttaaatggtactgaaattgcat |
486 |
Q |
| |
|
||||||| |||||| ||||||||||| |||||||| | |||||||||||||| | ||||| ||||||||||||||| || |||||||| ||||| ||| |
|
|
| T |
17115311 |
tctatagtgtcaaacccaacaagctcggaaactctgaaacatataacaaatgacaacatttttttatccaaatcttttttgaatggtaccaaaatttcat |
17115212 |
T |
|
| Q |
487 |
catttggataaaatacaccacattcatctgcatatctaaaatatggacgccaaagaaaatcattgatagccaagtc |
562 |
Q |
| |
|
||||||||||||| | ||||| | ||| |||||||||| |||||||||||||||||||||| || ||| ||||| |
|
|
| T |
17115211 |
catttggataaaacattccacacttatcagcatatctaatgtatggacgccaaagaaaatcatcgacagctaagtc |
17115136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 387 - 556
Target Start/End: Complemental strand, 26652316 - 26652144
Alignment:
| Q |
387 |
tctatagagtcaaatccaacaagctcagaaactctcaggcatataacaaatgagagcatttgtttatcca---aatctttcttaaatggtactgaaattg |
483 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| |||| |||||||||||||||||||| |||||| ||||||||||||||||||| || || |
|
|
| T |
26652316 |
tctatagactcaaatccaactagctcagaaactctttagcatttaacaaatgagagcatttgtatatccaccaaatctttcttaaatggtaccaaagttc |
26652217 |
T |
|
| Q |
484 |
catcatttggataaaatacaccacattcatctgcatatctaaaatatggacgccaaagaaaatcattgatagc |
556 |
Q |
| |
|
| |||||||||||||| || |||| | ||||||||| | || ||| |||||||||| ||||||||||||||| |
|
|
| T |
26652216 |
cgtcatttggataaaacacttcacacttatctgcataccgaacataaggacgccaaataaaatcattgatagc |
26652144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 20006421 - 20006470
Alignment:
| Q |
34 |
taagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatca |
83 |
Q |
| |
|
||||| || ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20006421 |
taagagtgccaacaagattgggaggaaatccatctggaacaccaacatca |
20006470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 34 - 549
Target Start/End: Complemental strand, 1718171 - 1717653
Alignment:
| Q |
34 |
taagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaacatgagctctgtgtttccttgagct |
133 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| |||| |||||| ||||| |||| | |
|
|
| T |
1718171 |
taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaaca |
1718072 |
T |
|
| Q |
134 |
ttcacttctcttccgcttcacaatgtttttaacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctca |
233 |
Q |
| |
|
| ||| ||||||| ||| |||| | || |||||||||||| || ||| ||||| |||||||| |||||||||||| ||| |||| | ||||| |
|
|
| T |
1718071 |
tgcacatctcttctgctgcacacttttcttaacaaaatcgttgctgccagataccaattgcttccaccaccttgcataacgtgaggtaacatttccctca |
1717972 |
T |
|
| Q |
234 |
taaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagtttttccaagcaatgaatctagtctcattgaatctaggcacataacttg |
333 |
Q |
| |
|
||| ||| | ||| ||||||| | | ||||| |||| | || || |||| ||||||||||||| || ||| |||||||||||||||||||| ||||| |
|
|
| T |
1717971 |
aaaaatctcgatggaaaatacatttttttatcagatatgggcctgcagtagtgtttccaagcaatggatttagcctcattgaatctaggcacatcacttg |
1717872 |
T |
|
| Q |
334 |
gaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaagctcagaaactctcaggcatataac |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| ||||||||| |
|
|
| T |
1717871 |
gaacatcttgatccattccaaattgcatagcaactctatgtggcagatactgctctatagagtcaaatccaacaagttcagatactctcaagcatataac |
1717772 |
T |
|
| Q |
434 |
aaatgagagcatttgtttat---ccaaatctttcttaaatggtactgaaattgcatcatttggataaaatacaccacattcatctgcatatctaaaatat |
530 |
Q |
| |
|
|||||| |||||||||| || |||||||||||||||||||||| ||||| |||||| ||||||||| | |||| | ||| |||||||||| |||| |
|
|
| T |
1717771 |
aaatgacagcatttgttcatccaccaaatctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatat |
1717672 |
T |
|
| Q |
531 |
ggacgccaaagaaaatcat |
549 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
1717671 |
ggacgccaaataaaatcat |
1717653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 141 - 549
Target Start/End: Complemental strand, 38483819 - 38483409
Alignment:
| Q |
141 |
ctcttccgcttcacaatgtttttaacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtc |
240 |
Q |
| |
|
||||||| |||||||||||| |||||||||||| ||||||| ||| || |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38483819 |
ctcttccacttcacaatgttcttaacaaaatcgccatgacctaat------tgtttccaccacattgcataacgtgtggttacatctgcctcaaaaagta |
38483726 |
T |
|
| Q |
241 |
ttggtgggaaatacaaatctgtat--------caaatataa-gtctacaatagtttttccaagcaatgaatct-agtctcattgaatctaggcacataac |
330 |
Q |
| |
|
| ||||| | |||||| | | | | || |||||| | ||| |||||||||||||| ||||||| | ||| |||||||| | |||||||| |
|
|
| T |
38483725 |
tcggtggaatatacaagtatttcttttcttttcagatataaagcctaaaatagtttttccaaagaatgaattttagttagattgaatccacacacataac |
38483626 |
T |
|
| Q |
331 |
ttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaagctcagaaactctcaggcatat |
430 |
Q |
| |
|
||| |||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||| ||||||||| |||||| |
|
|
| T |
38483625 |
ttgtaacatcttaatccataccaaattgcatagcaactctatga--caaatactgctctatagtctcaaatctaacaagctcaaaaactctcaagcatat |
38483528 |
T |
|
| Q |
431 |
aacaaatgagagcatttgtttatccaaatctttcttaaatggtactgaaattgcatcatttggataaaatacaccacattcatctgcatatctaaaatat |
530 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||| ||| |||||||||| ||||||| | |||||| | ||| |||||||||||||| |
|
|
| T |
38483527 |
aacaaatgagagcatttgtttatccaaatatttcttaaacggtaccaaaagtgcatcattttgataaaacaaaccacacttatcatcatatctaaaatat |
38483428 |
T |
|
| Q |
531 |
ggacgccaaagaaaatcat |
549 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
38483427 |
ggacgctaaagaaaatcat |
38483409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 38483897 - 38483820
Alignment:
| Q |
9 |
acatcatcacaaaaattttgataattaagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcatta |
86 |
Q |
| |
|
||||||||||| || ||| | ||||| ||| ||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
38483897 |
acatcatcacagaattttaaaaaattaggaaggtcaacaagatctggaggaaattcaggtggaacaccaacatcatta |
38483820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 4e-64; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 191 - 499
Target Start/End: Original strand, 22655640 - 22655948
Alignment:
| Q |
191 |
ttgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagtttttc |
290 |
Q |
| |
|
|||| |||||||| |||||||| ||||||| |||||| |||| | | ||||||||| |||||||| | | ||||| |||| |||| || ||||||||| |
|
|
| T |
22655640 |
ttgcttccaccaccttgcataatgtgtggtaacatctatctcaaataatcttggtggaaaatacaagtttttatcagatatgggtctgcagtagtttttc |
22655739 |
T |
|
| Q |
291 |
caagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctcta |
390 |
Q |
| |
|
||||||||| || ||||||||||||| |||| ||||||| |||||||||||||| |||||||||||||||| ||||||| |||| | ||| | |||| |
|
|
| T |
22655740 |
caagcaatgtatttagtctcattgaacctagctacataacccggaacatcttgatcaattccaaattgcatagaaactctacgtggaagatatttttcta |
22655839 |
T |
|
| Q |
391 |
tagagtcaaatccaacaagctcagaaactctcaggcatataacaaatgagagcatttgtttatccaaatctttcttaaatggtactgaaattgcatcatt |
490 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| |||| |||||||||||| |||| | |||||||||| |||||||||||||| ||||| ||||||| |
|
|
| T |
22655840 |
tagactcaaatccaacaagctcagaaaccctcaaacatacaacaaatgagagaatttttgtatccaaatccttcttaaatggtaccaaaatttcatcatt |
22655939 |
T |
|
| Q |
491 |
tggataaaa |
499 |
Q |
| |
|
|||||||| |
|
|
| T |
22655940 |
aggataaaa |
22655948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 313 - 546
Target Start/End: Original strand, 22689119 - 22689355
Alignment:
| Q |
313 |
tgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaagctc |
412 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||| ||| |||||||||||||||| | ||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
22689119 |
tgaatctagagacataaccaggaacatcttgatccattccaaactgcctagcaactctatgtggtagatattgctctatagactcaaatccaactagctc |
22689218 |
T |
|
| Q |
413 |
agaaactctcaggcatataacaaatgagagcatttgtttatcc---aaatctttcttaaatggtactgaaattgcatcatttggataaaatacaccacat |
509 |
Q |
| |
|
||||||||||| ||||||||||||||| | ||||||||||||| ||||||||| | | || || ||||| |||| ||||||||||| || ||||| |
|
|
| T |
22689219 |
agaaactctcaagcatataacaaatgacaacatttgtttatccgccaaatctttcatcgacggcacacaaatttcatcctttggataaaacactccacac |
22689318 |
T |
|
| Q |
510 |
tcatctgcatatctaaaatatggacgccaaagaaaat |
546 |
Q |
| |
|
| ||| |||||||||| ||| |||||||||| ||||| |
|
|
| T |
22689319 |
ttatcagcatatctaacataaggacgccaaataaaat |
22689355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 285 - 549
Target Start/End: Complemental strand, 11544770 - 11544506
Alignment:
| Q |
285 |
tttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatact |
384 |
Q |
| |
|
||||||||||||||| | | |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| | ||| | |
|
|
| T |
11544770 |
tttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattccaaattgcatagcaactctatgtggaagatatt |
11544671 |
T |
|
| Q |
385 |
gctctatagagtcaaatccaacaagctcagaaactctcaggcatataacaaatgagagcatttgtttatccaaatctttcttaaatggtactgaaattgc |
484 |
Q |
| |
|
|||| ||||| ||||| ||||| ||||| |||||||||| | |||||||||||||| ||| |||||||||||| ||||||| ||||| || || | |
|
|
| T |
11544670 |
gctcaatagactcaaaaccaactagctcggaaactctcaatgacataacaaatgagagattttttttatccaaatccttcttaagcggtaccaaagtttc |
11544571 |
T |
|
| Q |
485 |
atcatttggataaaatacaccacattcatctgcatatctaaaatatggacgccaaagaaaatcat |
549 |
Q |
| |
|
||||||||||||||| | || | | ||| |||||| || |||||| |||||||||||||||| |
|
|
| T |
11544570 |
atcatttggataaaacatttcaaacttatcggcatattgaacatatgggcgccaaagaaaatcat |
11544506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 22685504 - 22685572
Alignment:
| Q |
31 |
aattaagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttag |
99 |
Q |
| |
|
||||||| ||| |||||||||| || |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
22685504 |
aattaagtgtgttaacaagattgaaagaaaatccaggtggaacaccaacatcattaccacttctgttag |
22685572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 351
Target Start/End: Original strand, 11563841 - 11563907
Alignment:
| Q |
285 |
tttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattc |
351 |
Q |
| |
|
||||||||||||||| | | |||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
11563841 |
tttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattc |
11563907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 8e-41; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 122 - 552
Target Start/End: Original strand, 12495246 - 12495680
Alignment:
| Q |
122 |
tttccttgagctttcacttctcttccgcttcacaatgtttttaacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggtt |
221 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| || ||||||||||| |||||||||| || |||||| ||||| || || ||||||| |||| |
|
|
| T |
12495246 |
tttccttgagctcaaacttctcttctgcttcacaatcttcttaacaaaatctccatgacccaacatcgattgcttccacaactttacataacgcatggta |
12495345 |
T |
|
| Q |
222 |
acatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagtttttccaagcaatgaatctagtctcattgaatctag |
321 |
Q |
| |
|
| |||||||||| | |||| ||||| |||||||||| | ||| | | || || ||| ||||||||||| ||||||| | | | || || || |||| |
|
|
| T |
12495346 |
atatctgcctcaaacagtcatggtgcaaaatacaaatttttattagacatgagcctagaatagtttttcgaagcaatatactttctatcgtttaacctag |
12495445 |
T |
|
| Q |
322 |
gcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaagctcagaaactct |
421 |
Q |
| |
|
|||||||| | || |||||| || ||||||||||| |||| ||||||||| | | ||| ||||||||| | |||||||||||||||| || |||| |
|
|
| T |
12495446 |
ctacataactcgaaatatcttggtcaattccaaattgtatagacactctatgtagaagatattgctctatacgcttaaatccaacaagctcaaaatctct |
12495545 |
T |
|
| Q |
422 |
caggcatataacaaatgagagcatttgtttatccaaatctttcttaaatggtactgaaattgcatcatttggataaaataca----ccacattcatctgc |
517 |
Q |
| |
|
|| ||||||| |||| | || |||| |||||||||||| |||||||||||||| ||||| ||| |||||||||||| | | ||||| | || | |
|
|
| T |
12495546 |
caagcatatagaaaatcaaagtatttttttatccaaatccttcttaaatggtacccaaatttcattatttggataaaaaaaaaattccacacttctcagg |
12495645 |
T |
|
| Q |
518 |
atatctaaaatatggacgccaaagaaaatcattga |
552 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
12495646 |
atatctagcatatggacgccaaagaaaatcattga |
12495680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 122 - 499
Target Start/End: Original strand, 12579343 - 12579721
Alignment:
| Q |
122 |
tttccttgagctttcacttctcttccgcttcacaatgtttttaacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggtt |
221 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| || ||||| ||||| |||||||||| ||||||||| |||||||| || ||||||| |||| |
|
|
| T |
12579343 |
tttccttgagctcaaacttctcttctgcttcacaatcttcttaacgaaatcttcatgacccaacattgattgcttccaccactttacataacgcatggta |
12579442 |
T |
|
| Q |
222 |
acatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagtttttccaagcaatgaatctagtctcattgaatctag |
321 |
Q |
| |
|
| |||||||||| | |||| ||||| |||||||||| | ||| | | || || ||| |||||||||| ||||||| | | | || || || |||| |
|
|
| T |
12579443 |
atatctgcctcaaacagtcatggtgcaaaatacaaatttttattagacatgagcctagaatagttttttgaagcaatatactttctatcgtttaacctag |
12579542 |
T |
|
| Q |
322 |
gcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaagctcagaaactct |
421 |
Q |
| |
|
|||||||||| || |||||| || ||||||||||| |||| ||||||||| | | ||| |||||||||| | |||||||||||||||| || |||| |
|
|
| T |
12579543 |
ttacataacttgaaatatcttggtcaattccaaattgtatagacactctatgtcgaagatattgctctataggcttaaatccaacaagctcaaaatctct |
12579642 |
T |
|
| Q |
422 |
caggcatataacaaatgagagca-tttgtttatccaaatctttcttaaatggtactgaaattgcatcatttggataaaa |
499 |
Q |
| |
|
|| ||||||| |||| | || | ||| |||||||||||| |||||||||||||| ||||| ||| |||||||||||| |
|
|
| T |
12579643 |
caagcatatagaaaatcaaagtattttttttatccaaatccttcttaaatggtacccaaatttcattatttggataaaa |
12579721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 122 - 499
Target Start/End: Original strand, 12519050 - 12519427
Alignment:
| Q |
122 |
tttccttgagctttcacttctcttccgcttcacaatgtttttaacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggtt |
221 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| || ||||||||||| |||||||||| || |||||| |||||||| || ||||||| |||| |
|
|
| T |
12519050 |
tttccttgagctcaaacttctcttctgcttcacaatcttcttaacaaaatctccatgacccaacatcgattgcttccaccactttacataacgcatggta |
12519149 |
T |
|
| Q |
222 |
acatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagtttttccaagcaatgaatctagtctcattgaatctag |
321 |
Q |
| |
|
| ||||||||| | |||| ||||| |||||||||| | ||| | | || || ||| ||||||||||| ||||||| | | | || || || |||| |
|
|
| T |
12519150 |
atttctgcctcaaacagtcatggtgcaaaatacaaatttttattagacatgagcctagaatagtttttcgaagcaatatactttctatcgtttaacctag |
12519249 |
T |
|
| Q |
322 |
gcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaagctcagaaactct |
421 |
Q |
| |
|
|||||||| | || || ||| || ||| ||||||| |||| ||||||||||| | | | | ||||||| | ||||||||||| |||| || |||| |
|
|
| T |
12519250 |
ctacataactcgaaatattttggtcaatttcaaattgaatagacactctatgtggaagaaaatcctctatacgcttaaatccaacaacctcaaaatctct |
12519349 |
T |
|
| Q |
422 |
caggcatataacaaatgagagcatttgtttatccaaatctttcttaaatggtactgaaattgcatcatttggataaaa |
499 |
Q |
| |
|
|| ||||||| |||| | || |||| |||||||||||| |||||||||||||| ||||| ||| |||||||||||| |
|
|
| T |
12519350 |
caagcatatagaaaatcaaagtatttttttatccaaatccttcttaaatggtacccaaatttcattatttggataaaa |
12519427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 323 - 423
Target Start/End: Complemental strand, 12581923 - 12581823
Alignment:
| Q |
323 |
cacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaagctcagaaactctc |
422 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||| |||| ||||| | | | | |||||||| | |||||||||| ||||| |||||||||| |
|
|
| T |
12581923 |
cacataacttgaaacatcttgatcaattccaaattgcataaaaactgtatgtcgaagacatagctctatatactcaaatccaataagcttagaaactctc |
12581824 |
T |
|
| Q |
423 |
a |
423 |
Q |
| |
|
| |
|
|
| T |
12581823 |
a |
12581823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 419
Target Start/End: Complemental strand, 12497808 - 12497712
Alignment:
| Q |
323 |
cacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaagctcagaaact |
419 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||||||||||| ||||||||| || | | | |||| ||| | |||||||||| ||||| ||||||| |
|
|
| T |
12497808 |
cacataacttgaaacatcttaatcaattccaaattgcatacaaactctatgcggaagacatagctcaatatactcaaatccaataagcttagaaact |
12497712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 419
Target Start/End: Complemental strand, 12521673 - 12521577
Alignment:
| Q |
323 |
cacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaagctcagaaact |
419 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||||||||||| ||||||||| || | | | |||| ||| | |||||||||| ||||| ||||||| |
|
|
| T |
12521673 |
cacataacttgaaacatcttaatcaattccaaattgcatacaaactctatgcggaagacatagctcaatatactcaaatccaataagcttagaaact |
12521577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 285 - 442
Target Start/End: Original strand, 39191394 - 39191551
Alignment:
| Q |
285 |
tttttccaagcaatgaatctagtctcattgaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatact |
384 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| | ||| | |
|
|
| T |
39191394 |
tttttccaagcaatggtttcagtctcattgaatctaggcacacaatctggaacatcttgatccattccaaattgcatagcaactctatgtggaagatatt |
39191493 |
T |
|
| Q |
385 |
gctctatagagtcaaatccaacaagctcagaaactctcaggcatataacaaatgagag |
442 |
Q |
| |
|
|||| ||||| ||||| ||||| ||||| |||||||||| | |||||||||||||| |
|
|
| T |
39191494 |
gctcaatagactcaaaaccaactagctccgaaactctcaatgacataacaaatgagag |
39191551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 294
Target Start/End: Original strand, 6397050 - 6397208
Alignment:
| Q |
136 |
cacttctcttccgcttcacaatgtttttaacaaaatcgacatgacccaatattgattgcctccaccacattgcataacgtgtggttacatctgcctcata |
235 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||| ||||||| || | |||||| || ||||| |||||||| | | || ||||| |||||| | |
|
|
| T |
6397050 |
cacttctcttccgcttcacaatcttcttaacaaaatctccatgacctaacaccgattgcttctaccactttgcataatgcatagtaacatcagcctcaaa |
6397149 |
T |
|
| Q |
236 |
aagtcttggtgggaaatacaaatctgtatcaaatataagtctacaatagtttttccaag |
294 |
Q |
| |
|
||||||||||| |||||||||| | ||||| | ||| | ||| | ||||||||||||| |
|
|
| T |
6397150 |
cagtcttggtggaaaatacaaatttttatcagacataggcctagagtagtttttccaag |
6397208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 499
Target Start/End: Complemental strand, 6399095 - 6398918
Alignment:
| Q |
323 |
cacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatactgctctatagagtcaaatccaacaagctcagaaactctc |
422 |
Q |
| |
|
||||||||| | || |||||| || |||||||| ||||||| ||||||| || | ||| | || |||||| |||| ||||||||||||| |||||||| |
|
|
| T |
6399095 |
cacataactcgaaagatcttggtcaattccaaactgcatagaaactctacgtagatgatatttctttatagactcaattccaacaagctcataaactctc |
6398996 |
T |
|
| Q |
423 |
aggcatataacaaatgagagca-tttgtttatccaaatctttcttaaatggtactgaaattgcatcatttggataaaa |
499 |
Q |
| |
|
| |||||| |||||| || | ||| |||||||||||| ||||| | |||||| ||||| | | |||||||||||| |
|
|
| T |
6398995 |
aaacatatagaaaatgaaagtattttttttatccaaatccttctttagtggtacccaaattccgttatttggataaaa |
6398918 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 19562 - 19601
Alignment:
| Q |
43 |
caacaagattgggaggaaatccaggtggaacaccaacatc |
82 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
19562 |
caacaagaatgggaggaaatccaggtagaacaccaacatc |
19601 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 28219064 - 28219103
Alignment:
| Q |
43 |
caacaagattgggaggaaatccaggtggaacaccaacatc |
82 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
28219064 |
caacaagaatgggaggaaatccaggtagaacaccaacatc |
28219103 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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