View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18411_low_1 (Length: 842)
Name: NF18411_low_1
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 748; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 748; E-Value: 0
Query Start/End: Original strand, 18 - 829
Target Start/End: Complemental strand, 32085460 - 32084649
Alignment:
| Q |
18 |
ataatagtctcgaattcaaagagatatctactttgggacttgttgtgtgttttgtattttaaaaagttgtcgtgtgaccgcacatttatttgaaactaac |
117 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32085460 |
ataatagtctcgaattcaaagagatatctattttgggacttgttgtgtgttttgtattttaaaaagttgtcgtgtaaccgcacatttatttgaaactaat |
32085361 |
T |
|
| Q |
118 |
aattggagcttcagaaaacttttggtggtgacatgttgggttaccaaacacagtattagtacaattcaagtcgatttttgcatcaaactctaagactgcg |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32085360 |
aattggagcttcagaaaacttttggtggtgacatgttgggttaccaaacacagtattagtacaattcaagtcgatttttgcatcaaactctaagactgcg |
32085261 |
T |
|
| Q |
218 |
gtgtgaattgaaagatcgttggctcaatcaagtgcttcaataagtcccaagactttcccttcacgagggtgacaagcaaatcacagtttttgaaagaatt |
317 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32085260 |
gtgtgaattgaaagatcgttgggtcaatcaagtgcttcaataagtcccaagactttcccttcacgagggtgacaagcaaatcacagtttttgaaagaatt |
32085161 |
T |
|
| Q |
318 |
aattctcttgcttcccctgtcaaacacatcgacaaaacaatatgatgttgatgggaagcaaatatgataagacatggactggaagcaaagagtaaggtca |
417 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
32085160 |
aattctcttgattcccctgtcaaacacatcgacaaaacaatatgatgttgatggaaagcaaatatgataagacatagactggaagcaaagagtaaggcca |
32085061 |
T |
|
| Q |
418 |
gacacaagagaggccaaatgagatgcctaaaagaaagatcatgactccaaagtactttagggattatgtcaaatcatctataagaaagccacacctttgc |
517 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32085060 |
gacacaagagaggccacatgagatgcctaaaagaaagatcatgtctccaaagtactttagggattatgtcaaatcatctataagaaagccacacctttgc |
32084961 |
T |
|
| Q |
518 |
atttcctaatatattgatgtgattccagcattttcaaatcaagcaagacttaaaatctcattatctatttccttcttaggaggttatattagccctctag |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32084960 |
atttcctaatatattgatgtgattccagcattttcaaatcaagcaagacttaaaatctcattatctatttccttcttaggaggttatattagccctctag |
32084861 |
T |
|
| Q |
618 |
ctatagcaaatttactcagttcctaatacttcggtattttcatcgagctaatctggaaactactcgttcaaaatccaccgctaataaaatggaagaagcc |
717 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32084860 |
ctatagcaaatttactcagttcctaatactttggtattttcatcgagctaatctggaaactactcgttcaaaatccaccgctaataaaatggaagaagcc |
32084761 |
T |
|
| Q |
718 |
gttagcaaactcactaccaatcaatccacccttggtgaaacccaaactcttacagcctccaaaattgacgacattttccacaaatttgcctcccttgaaa |
817 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| || |||||||||| |
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| T |
32084760 |
attagcaaactcactaccaatcaatccacccttggtgaaacccaaactcttacggcctccaaaattgacgacattctccacaaattagcgtcccttgaaa |
32084661 |
T |
|
| Q |
818 |
tacccattccct |
829 |
Q |
| |
|
|||||||||||| |
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| T |
32084660 |
tacccattccct |
32084649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 530 - 823
Target Start/End: Complemental strand, 32086411 - 32086120
Alignment:
| Q |
530 |
attgatgtgattccagcattttcaaatcaagcaagacttaaaatctcattatctatttccttcttaggaggttatattagccctctagctatagcaaatt |
629 |
Q |
| |
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||||| || ||||||||||||| |||||||| |||| | |||| ||||||||| |||||||||||||||||| ||| ||| | |||| ||||||| |
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| T |
32086411 |
attgaagtaattccagcattttgaaatcaagaaagaatctaaatttcattatctttttccttcttaggaggttgc--tagtccttgaactattgcaaatt |
32086314 |
T |
|
| Q |
630 |
tactcagttcctaatacttcggtattttcatcgagctaatctggaaactactcgttcaaaatccaccgctaataaaatggaagaagccgttagcaaactc |
729 |
Q |
| |
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||| |||||||||| |||| ||| ||||||||| ||||||| ||||||| |||| ||| |||| || ||||||||||||||||| ||||||||||| |
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| T |
32086313 |
tacccagttcctaacactttggtgttttcatcgggctaatccaaaaactacatgttcgaaagccacagccgataaaatggaagaagccattagcaaactc |
32086214 |
T |
|
| Q |
730 |
actaccaatcaatccacccttggtgaaacccaaactcttacagcctccaaaattgacgacattttccacaaatttgcctcccttgaaataccca |
823 |
Q |
| |
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| ||| |||||| ||||||| ||||| ||||||||| | |||||| |||||| |||||| ||||||| || ||||||||||| ||||||| |
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| T |
32086213 |
attactgatcaatttacccttgttgaaatccaaactctcccggcctccctaattgatgacattctccacaagttagcctcccttgacataccca |
32086120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 158 - 384
Target Start/End: Complemental strand, 32087082 - 32086848
Alignment:
| Q |
158 |
ttaccaaacacagtattagtacaattcaagtcgatttttgcatcaaactctaagactgcggtgtgaattgaaagatcgttggctcaatcaagtgcttcaa |
257 |
Q |
| |
|
|||||||||||| |||||||||||| || | |||||||| || |||||| |||| | | |||||| | ||| || ||||| |||| ||||| |||||| |
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|
| T |
32087082 |
ttaccaaacacattattagtacaatccatattgatttttgtattaaactcaaagattatgatgtgaactaaaatattgttggttcaaccaagttcttcaa |
32086983 |
T |
|
| Q |
258 |
taagtcccaagactttcccttcacgagggt------gacaagcaaatcaca--gtttttgaaagaattaattctcttgcttcccctgtcaaacacatcga |
349 |
Q |
| |
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||||||||| ||| |||||||||||| | || ||| |||||||| |||||| ||||||| ||| || | |||||||| ||||||||||||| |
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| T |
32086982 |
gaagtcccaatgcttccccttcacgaggtttgacttgataagaaaatcacatagtttttacaagaattgattatcctacttcccctctcaaacacatcga |
32086883 |
T |
|
| Q |
350 |
caaaacaatatgatgttgatgggaagcaaatatga |
384 |
Q |
| |
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||||||||||| |||||||| ||||| |||||||| |
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| T |
32086882 |
caaaacaatataatgttgattggaagaaaatatga |
32086848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 32087236 - 32087159
Alignment:
| Q |
18 |
ataatagtctcgaattcaaagagatatctactttgggacttgttgtgtgttttgtattttaaaaagttgtcgtgtgac |
95 |
Q |
| |
|
||||||||||| |||||| |||||| ||||||| ||||| |||||||||| ||||||||||||||||| ||||||| |
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| T |
32087236 |
ataatagtctcaaattcatagagatctctacttcaagacttattgtgtgtttggtattttaaaaagttgttgtgtgac |
32087159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 44715748 - 44715816
Alignment:
| Q |
61 |
tgtgtgttttgtattttaaaaagttgtcgtgtgaccgcacattt-atttgaaactaacaattggagctt |
128 |
Q |
| |
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||||||||| |||||||||||||| || |||| ||||||||||| | | ||| |||||||||||||||| |
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| T |
44715748 |
tgtgtgtttagtattttaaaaagtcgtggtgttaccgcacatttgaatagaagctaacaattggagctt |
44715816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 39213667 - 39213593
Alignment:
| Q |
62 |
gtgtgttttgtattttaaaaagttgtcgtgtgaccgcacatttatttgaaactaacaattggagcttcagaaaac |
136 |
Q |
| |
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||||| || |||||||||||||||| ||||||| |||||||| ||||| |||||||||||||||||||||||| |
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| T |
39213667 |
gtgtgattggtattttaaaaagttgcggtgtgactgcacatttggttgaagctaacaattggagcttcagaaaac |
39213593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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