View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18411_low_11 (Length: 471)
Name: NF18411_low_11
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 20 - 453
Target Start/End: Complemental strand, 45515224 - 45514791
Alignment:
| Q |
20 |
tgtgatttcatttggaatgaatccaaccaaattgttttgtgacaagtccatgttgaccacaagctccaatattttggtatactcaagttctgttcctttc |
119 |
Q |
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| T |
45515224 |
tgtgatttcatttggaatgaatccaaccaaattgttttgtgacaagtccatgttgaccacaagctccaatattttggtatactcaagttctgttcctttc |
45515125 |
T |
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| Q |
120 |
actacttccgtgacaaattgactaggccaatcaaccggagtactaggagggaatgcattgacatctgtaagaaactcatttgaccatgtctgaggagcat |
219 |
Q |
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| T |
45515124 |
actacttccgtgacaaattgactaggccaatcaaccggagtactaggaggtaatgcattgacatctgtaagaaactcatttgaccatgtctgaggagcat |
45515025 |
T |
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| Q |
220 |
ctgctattaaattgtatgactgcatatgaactgatgatgatgttgattttcccaatgtcattccttcaaggtttcctatgcatcgaggtattgaaccttg |
319 |
Q |
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| T |
45515024 |
ctgctattaaattgtatgactgcatatgaactgatgatgatgttgattttcccaatgtcattccttcaaggtttcctatgcatcgaggtattgaaccttg |
45514925 |
T |
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| Q |
320 |
caatttgtttctagagaggtccagaatttggagtgatttgagttgacatagttgtgaaggaatactagcgctaaacatattttgtcgcaatataagaatt |
419 |
Q |
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| T |
45514924 |
caatttgtttctagagaggtccagaatttggagtgatttgagttgacatagttgtgaaggaatactagcgctaaacatattttgtcgcaatataagaatt |
45514825 |
T |
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| Q |
420 |
tgcaatgaagggaaggtgtttgctgtccatgatg |
453 |
Q |
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| T |
45514824 |
tgcaatgaagggaaggtgtttgctgtccatgatg |
45514791 |
T |
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