View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18411_low_12 (Length: 455)
Name: NF18411_low_12
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 29116346 - 29116037
Alignment:
| Q |
1 |
tatagaatgattacccctttgcttttgtctttaatgacatacattccatgttcagaatcacatttgttaca--------------tcctaatattttata |
86 |
Q |
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| T |
29116346 |
tatagaatgattacccctttgcttttgtctttaatgacatacattccatgttcagaatcacatttgttacaaagggcttgtaacatcctaatattttata |
29116247 |
T |
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| Q |
87 |
cacggtatataaagatttattcgatatttaattatttaattaaaccacatggtgtagaaataaataataggggtgagtaagctatttgactaattcaaat |
186 |
Q |
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| T |
29116246 |
cacgttgtataaagatttattcaatatttaattatttaattaaaccacatggtgtagaaataaataataggggtgagtaagctatttgactaattcaaat |
29116147 |
T |
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| Q |
187 |
tttgatcatgcttagaagtgaggcgtgtgaaattgcaaccgaaacatttcctttcttttaggaattatctgtcaagtagttaataaccttataatgcctt |
286 |
Q |
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| T |
29116146 |
tttgatcatgctt---agtgaggcgtgtgaaattgcaaccgaaacatttcctttcttttaggaaatatctgtcaagtagttaataaccttataatgcctt |
29116050 |
T |
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| Q |
287 |
gatcttcctataa |
299 |
Q |
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| T |
29116049 |
gatcttcctataa |
29116037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 327 - 454
Target Start/End: Complemental strand, 29116041 - 29115912
Alignment:
| Q |
327 |
tataaaatttagatgagatcatttggttccaaatcctgttctattttaataaaccataacttgttactcaattttaattcgacaaaaccatc---catgt |
423 |
Q |
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| T |
29116041 |
tataaaacttagatgagatcatttggttccaaatcctgttctattttaataaaccataacttgttactcaattttaattctacaaaaccatcctgcatgt |
29115942 |
T |
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| Q |
424 |
gtatcatgtctagtttaataaaccgtaactt |
454 |
Q |
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| T |
29115941 |
ttat-atttctagtttaataaaccgtaactt |
29115912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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