View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18411_low_13 (Length: 446)
Name: NF18411_low_13
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_low_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 9 - 446
Target Start/End: Complemental strand, 1702342 - 1701905
Alignment:
| Q |
9 |
agcacagatatccaaagactccaagattaagataattaggagtggaaccaaacagaatttcattaggacatttgtttttaagatgtgttgttgtcatgcg |
108 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
1702342 |
agcacagacatccaaagactcgaagattaagataattaggagtggaaccaaacagaatttcatgaggacatttgtttttaagatgtgttgttggcatgcg |
1702243 |
T |
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| Q |
109 |
atttattaaatacaccgccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacga |
208 |
Q |
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| T |
1702242 |
atttattaaatacaccgccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacga |
1702143 |
T |
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| Q |
209 |
tgtttgcgttctgcaataccaatatgttcgggagtgtacggtgggctgatatcgtgagatataccatgagagttaagatatggcttgagttttatgtatt |
308 |
Q |
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| T |
1702142 |
tgtttgcgttctgcaataccaatatgttcgggagtgtacggtgggctgatatagtgagatataccatgagagttaagatatggcttgagttttatgtatt |
1702043 |
T |
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| Q |
309 |
cagtgccaccatcggtgtagagggatttaactttgtatgaaaacatagtttcaacttttgaatgaaaatttggaaatatagtaacaacatcagttttact |
408 |
Q |
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| T |
1702042 |
cagtgccaccatcggtgtagagggatttaactttgtatgaaaacatagtttcaacttttgaatgaaaatttggaaatatagtaacaacatcagttttact |
1701943 |
T |
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| Q |
409 |
ttttaacagataaatccaagaatattgagtaaaatgat |
446 |
Q |
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| T |
1701942 |
ttttaacggataaatccaagaatatcgagtaaaatgat |
1701905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 125 - 344
Target Start/End: Complemental strand, 5400962 - 5400743
Alignment:
| Q |
125 |
gccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgatgtttgcgttctgcaa |
224 |
Q |
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| T |
5400962 |
gccatttgaaaagcataacaccagaatgtttgaggtacagaagagtgagagagaagtgtgagagcagtttctactatatggcggtgtttgcgttcagcaa |
5400863 |
T |
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| Q |
225 |
taccaatatgttcgggagtgtacggtgggctgatatcgtgagatataccatgagagttaagatatggcttgagttttatgtattcagtgccaccatcggt |
324 |
Q |
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| T |
5400862 |
tgccaatgtgttcaggagtataaggtgggctaatgtaatgggatattccatgtgtattgaaatatggcttgagtttaaagtattcagttccaccatcagt |
5400763 |
T |
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| Q |
325 |
gtagagggatttaactttgt |
344 |
Q |
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| T |
5400762 |
gtaaatagatttgactttgt |
5400743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 125 - 344
Target Start/End: Complemental strand, 3541937 - 3541718
Alignment:
| Q |
125 |
gccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgatgtttgcgttctgcaa |
224 |
Q |
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| T |
3541937 |
gccatttgaaaagcataacaccagaatgtttgaggtacagaagagtgagagagaagtgtgagagcagtttctactatatggcggtgtttgcgttcagcaa |
3541838 |
T |
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| Q |
225 |
taccaatatgttcgggagtgtacggtgggctgatatcgtgagatataccatgagagttaagatatggcttgagttttatgtattcagtgccaccatcggt |
324 |
Q |
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| T |
3541837 |
tgccaatgtgttcaggagtataaggtgggctaatgtaatgggatattccatgtgtattgaaatatggcttgagtttaaagtattcagttccaccatcagt |
3541738 |
T |
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| Q |
325 |
gtagagggatttaactttgt |
344 |
Q |
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| T |
3541737 |
gtaaatagatttgactttgt |
3541718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 26592278 - 26592339
Alignment:
| Q |
191 |
gtttctactatatgacgatgtttgcgttctgcaataccaatatgttcgggagtgtacggtgg |
252 |
Q |
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| T |
26592278 |
gtttcgactatatggcaatgtttgcgttctgcaatgccaatatgttcaggagtgtaaggtgg |
26592339 |
T |
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