View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18411_low_14 (Length: 446)
Name: NF18411_low_14
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 14 - 431
Target Start/End: Original strand, 43961843 - 43962260
Alignment:
| Q |
14 |
gaagaagacgtgaatcgcgggaaggagcaagttgatgtcgctgaacaaacgacagaggaagatttggctccaaataggttgttttcgccggttcaagagc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43961843 |
gaagaagacgtgaatcgcgggaaggagcaagttgatgtcgctgaacaaacggcggaggaagatttggctccaaataggttgttttcgccggttcaagagc |
43961942 |
T |
|
| Q |
114 |
aacaacgggtggaattgaagattagtaagagtgccaaacttccaatcttttcagtttgatggatgattcagctgtttgatggtgtttttgtgtaattgtt |
213 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43961943 |
aacaacgcgtggaattgaagattagtaagagtgccacacttccaatcttttcagtttgatggatgattcagctgtttgatggtgtttttgcgtaattgtt |
43962042 |
T |
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| Q |
214 |
gttctttccttcttcctcccttcaaattggttttgcttccgcttgattctgctcgttttggatccggtttgtttgtgagtggaggtggagtttcggttgg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43962043 |
gttctttccttcttcctcccttcaaattggttttgcttcctcttgattttgctcgttttggatccagtttgtttgtgagtggaggtggagtttcggttgg |
43962142 |
T |
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| Q |
314 |
tatggatttgggttatggttagaacaacaacaaatagtggtggttgtagttatgaattttgaacggctggtgattgtttgtggatgaatttcgaaattgt |
413 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43962143 |
tatggatttgggttatggttagaacaacaacaaacagtggtggttgtagttatgaatttcgaacggctggtgattgtttgtggatgaatttcgaaattgt |
43962242 |
T |
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| Q |
414 |
ggttttgaatgaattatg |
431 |
Q |
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|||||||||||||||||| |
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| T |
43962243 |
ggttttgaatgaattatg |
43962260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 18787991 - 18787937
Alignment:
| Q |
152 |
cttccaatcttttcagtttgatggatgattcagctgtttgatggtgtttttgtgt |
206 |
Q |
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| T |
18787991 |
cttccgatctgttcagtttgatggatgatttggctgtttgattgtgtttatgtgt |
18787937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 158 - 428
Target Start/End: Original strand, 38234277 - 38234547
Alignment:
| Q |
158 |
atcttttcagtttgatggatgattcagctgtttgatggtgtttttgtgtaattgttgttctttccttcttcctcccttcaaattggttttgcttccgctt |
257 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38234277 |
atctgttcggtttgatggatgattcagctgtttgatggtgtttttgcgtaattgttgttctttccttcttcctcccttcaaattggttttgcttcctctt |
38234376 |
T |
|
| Q |
258 |
gattctgctcgttttggatccggtttgtttgtgagtggaggtggagtttcggttggtatggatttgggttatggttagaacaacaacaaatagtggtggt |
357 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||| |
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| T |
38234377 |
gattttgctcgttttggatccagtttgtttgtgagtggaggtggagtttcggttggtatggatttgggttatggttcgaacaataacaaacagtggtggt |
38234476 |
T |
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| Q |
358 |
tgtagttatgaattttgaacggctggtgattgtttgtggatgaatttcgaaattgtggttttgaatgaatt |
428 |
Q |
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| T |
38234477 |
tgtagttattatttttgaacggctggtgattgtttgtggatgaatttcgaaattgtggttttgaatgaatt |
38234547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 39289025 - 39289093
Alignment:
| Q |
81 |
ctccaaataggttgttttcgccggttcaagagcaacaacgggtggaattgaagattagtaagagtgcca |
149 |
Q |
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| T |
39289025 |
ctccgaatagattgttttctccggtgcaagagcaacaacgggtggaattgaagattagtaagagtgcca |
39289093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 168 - 428
Target Start/End: Original strand, 6803071 - 6803331
Alignment:
| Q |
168 |
tttgatggatgattcagctgtttgatggtgtttttgtgtaattgttgttctttccttcttcctcccttcaaattggttttgcttccgcttgattctgctc |
267 |
Q |
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||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
6803071 |
tttgatggatgattcagttgtttgatggtgtttttgcgtgattgttgttctttccttcttcctcccttcaaatcggttttgcttcctcttgattctgctc |
6803170 |
T |
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| Q |
268 |
gttttggatccggtttgtttgtgagtggaggtggagtttcggttggtatggatttgggttatggttagaacaacaacaaatagtggtggttgtagttatg |
367 |
Q |
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| T |
6803171 |
gttttggatccggtttgtttgtgagtggaggtggagtttcggttggtatggatttgtgttatggttcgaacaataacaaacagtggtggttgtagttatg |
6803270 |
T |
|
| Q |
368 |
aattttgaacggctggtgattgtttgtggatgaatttcgaaattgtggttttgaatgaatt |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6803271 |
ttttttgaacggctggtgattgtttgtggatgaatttcgaaattgtggttttgaatgaatt |
6803331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 152 - 428
Target Start/End: Original strand, 12373161 - 12373435
Alignment:
| Q |
152 |
cttccaatcttttcagtttgatggatgattcagctgtttgatggtgtttttgtgtaattgttgttctttccttcttcctcccttcaaattggttttgctt |
251 |
Q |
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||||| |||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||| || |
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| T |
12373161 |
cttccgatctgttcggtttgatggatgattcagctgtttgatggtgtttttgtgtgattgttgttctttccttcttcttcccttcaaatcagttttg-tt |
12373259 |
T |
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| Q |
252 |
ccgcttgattctgctcgttttggatccggtttgtttgtgagtggaggtggagtttcggttggtatggatttgggttatggttagaacaacaacaaatagt |
351 |
Q |
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| T |
12373260 |
cctcttgattccgctcgttttggatccggtttgtttgtgagtggaggtggagtttcggttggtatgtatttgggttatggttcgaacaataacaaacagt |
12373359 |
T |
|
| Q |
352 |
ggtggttgtagttatgaattttgaacggctggtgattgtttgtggatgaatttcgaaattgtggttttgaatgaatt |
428 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
12373360 |
ggtggttgtagttatgatttttgaacggctggtg-ttgtttgtggatgaatttcgaaattctggttttgaatgaatt |
12373435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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