View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18411_low_16 (Length: 410)
Name: NF18411_low_16
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 18817080 - 18817187
Alignment:
| Q |
19 |
tgcaagatgtgatgacatagattgccgttcacattgtaaatctcttcatggagcaaaatcatttggttttatatgtgatgatttcaacctatgcacttgt |
118 |
Q |
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| T |
18817080 |
tgcaagatgtgatgacatagattgccgttcacattgtaaatctcttcatggggcaaaatcatttggttttatatgtgatgatttcaacctatgcacttgt |
18817179 |
T |
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| Q |
119 |
attttcaa |
126 |
Q |
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| T |
18817180 |
tttttcaa |
18817187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 308
Target Start/End: Complemental strand, 18773154 - 18772954
Alignment:
| Q |
105 |
acctatgcacttgtattttcaatcaagattctccatcaccaaatatatgtcatgctggggtgggaacatgctttcagggtgaatgtgatttatcttgttg |
204 |
Q |
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| T |
18773154 |
acctatgcacttgtactttcaatcaaaatccttcctcaaagaatttgtgtcgtattgggatgggaacatgctatcaaggtgaatgtgatcaatcttgttg |
18773055 |
T |
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| Q |
205 |
caatgcaagatgtgcttccacnnnnnnnaaagaagcttctggtacttgtgttccaaatcctggtaccaaggatagatgcgtttgttcttacagaagctag |
304 |
Q |
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| T |
18773054 |
taatgcaaagtgtgctgccac---ttataaacaaggttttgggacttgtattccaaatcagtttaccaaggatagatgtgtttgttcctatagaagctag |
18772958 |
T |
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| Q |
305 |
aaat |
308 |
Q |
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|||| |
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| T |
18772957 |
aaat |
18772954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 18817616 - 18817650
Alignment:
| Q |
356 |
tcaaataagtttaatattacatctgaatctgaggt |
390 |
Q |
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| T |
18817616 |
tcaaataaatttaatattacatctgaatctgaggt |
18817650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 308
Target Start/End: Original strand, 19647079 - 19647283
Alignment:
| Q |
101 |
ttcaacctatgcacttgtattttcaatcaagattctccatcaccaaatatatgtcatgctggggtgggaacatgctttcagggtgaatgtgatttatctt |
200 |
Q |
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| T |
19647079 |
ttcaacctatgcacttgtactttcaatcaagatccttcctcaaacaatttgtgtcgtattggcatgggaacatgctaccaggatgaatgtgatcaatctt |
19647178 |
T |
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| Q |
201 |
gttgcaatgcaagatgtgcttccacnnnnnnnaaagaagcttctggtacttgtgttccaaatcctggtaccaaggatagatgcgtttgttcttacagaag |
300 |
Q |
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| T |
19647179 |
gttgtaatgcaaagtgtgctggcac---ttataaagaaggttttgggagttgtataccaaatcagtttaccaaggatagatgtgtttgttcctatagaag |
19647275 |
T |
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| Q |
301 |
ctagaaat |
308 |
Q |
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|||||||| |
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| T |
19647276 |
ctagaaat |
19647283 |
T |
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