View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18411_low_17 (Length: 402)

Name: NF18411_low_17
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18411_low_17
NF18411_low_17
[»] chr2 (1 HSPs)
chr2 (15-385)||(17831396-17831766)
[»] chr4 (4 HSPs)
chr4 (15-385)||(7135451-7135800)
chr4 (137-264)||(52525386-52525515)
chr4 (206-366)||(22292156-22292316)
chr4 (15-89)||(52525312-52525386)
[»] chr8 (3 HSPs)
chr8 (206-287)||(5658334-5658415)
chr8 (207-280)||(14677485-14677558)
chr8 (206-287)||(31100334-31100415)
[»] scaffold0045 (1 HSPs)
scaffold0045 (206-286)||(11096-11176)
[»] chr6 (2 HSPs)
chr6 (206-280)||(10093043-10093117)
chr6 (206-287)||(33044908-33044989)
[»] scaffold0035 (1 HSPs)
scaffold0035 (207-287)||(35639-35719)
[»] chr7 (1 HSPs)
chr7 (232-291)||(37362214-37362273)
[»] chr3 (1 HSPs)
chr3 (206-251)||(17682380-17682425)


Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 15 - 385
Target Start/End: Complemental strand, 17831766 - 17831396
Alignment:
Q  15 gaaatgaagaagaaggtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacctccgatttttgaaaatctgagtcatcttaagcgtt 114  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17831766 gaaatgatgaagaaggtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacctccgattttttaaaatctgagtcatcttaagcgtt 17831667  T
Q  115 ggagagggagataaactgagaatagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaaaat 214  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17831666 ggagagggagataaactgagaataatgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaaaat 17831567  T
Q  215 tcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaataaaacattaagcatgatggatgtt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17831566 tcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaataaaacattaagcatgatggatgtt 17831467  T
Q  315 taagatttagcaacagaagaagcattgttgatgaagggagagagaaacgatgaaagatttcggttcatatt 385  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||    
T  17831466 taagatttagcaacagaagaagcatcgtcgatgaagggagagagaaacgacgaaagatttcggttcatatt 17831396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 15 - 385
Target Start/End: Complemental strand, 7135800 - 7135451
Alignment:
Q  15 gaaatgaagaagaaggtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacctccgatttttgaaaatctgagtcatcttaagcgtt 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||    
T  7135800 gaaatggagaagaaggtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacatccgatttttgaaaatcttagtcatctcaagcgtt 7135701  T
Q  115 ggagagggagataaactgagaatagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaaaat 214  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  7135700 ggagagggagaaaaaatgagaatagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaa--- 7135604  T
Q  215 tcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaataaaacattaagcatgatggatgtt 314  Q
                      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||    
T  7135603 ------------------aaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaatagagcattaagtatgatggatgtt 7135522  T
Q  315 taagatttagcaacagaagaagcattgttgatgaagggagagagaaacgatgaaagatttcggttcatatt 385  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  7135521 tgagatttagcaacagaagaagcattgttgatgaagggagagagaaacgacggaagatttcggttcatatt 7135451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 137 - 264
Target Start/End: Original strand, 52525386 - 52525515
Alignment:
Q  137 tagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaaaattcaatt--catagaaagggtaa 234  Q
    |||| |||||||||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||||| ||||||||||   |||||||||||||    
T  52525386 tagtaaagaatgattgactccataaaggttctaggggatgaaagtgaaactgagaactgaaattcagagaaacgaaattcaatttctatagaaagggtaa 52525485  T
Q  235 aactattaccttgagagaaaattcacaaaa 264  Q
    ||| ||||||||||||||||||||||||||    
T  52525486 aacgattaccttgagagaaaattcacaaaa 52525515  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 206 - 366
Target Start/End: Original strand, 22292156 - 22292316
Alignment:
Q  206 aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaataaaacattaagcatg 305  Q
    ||||| |||||||| ||||||||||| ||| | |||||||||||||||| ||| |||||| | ||||||||||||  | |||||   | ||||||||||     
T  22292156 aaacacaattcaatacatagaaagggaaaagcgattaccttgagagaaacttcgcaaaattagcaaatctgaacagtggtggaagggagcattaagcata 22292255  T
Q  306 atggatgtttaagatttagcaacagaagaagcattgttgatgaagggagagagaaacgatg 366  Q
    |||||||| | ||||| |||||| | |||||| ||||||||||| |||||||| |||||||    
T  22292256 atggatgtcttagattcagcaacgggagaagctttgttgatgaacggagagagcaacgatg 22292316  T

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Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 52525312 - 52525386
Alignment:
Q  15 gaaatgaagaagaaggtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacctccgattttt 89  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||    
T  52525312 gaaatggagaagaaggtgaaagtgaaaagatgaacaattttgggaatgcctgaacattcaacacctccaattttt 52525386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 206 - 287
Target Start/End: Complemental strand, 5658415 - 5658334
Alignment:
Q  206 aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatgg 287  Q
    ||||| |||||||||||||||||||| ||| |||||||||||||||||| ||  |||||| | |||||||||||||||||||    
T  5658415 aaacacaattcaattcatagaaagggaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaacaacgatgg 5658334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 280
Target Start/End: Original strand, 14677485 - 14677558
Alignment:
Q  207 aacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaaca 280  Q
    |||| |||||||||||||||||||| ||| |||||||||||||||||| ||  |||||| | ||||||||||||    
T  14677485 aacacaattcaattcatagaaagggaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaaca 14677558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 287
Target Start/End: Original strand, 31100334 - 31100415
Alignment:
Q  206 aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatgg 287  Q
    ||||| ||||||||||||||||| |  ||| |||||||||||||||||| ||  |||||| | |||||||||||| ||||||    
T  31100334 aaacacaattcaattcatagaaaagaaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaacagcgatgg 31100415  T

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Target: scaffold0045 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 11096 - 11176
Alignment:
Q  206 aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatg 286  Q
    ||||| |||||||||||||||||||| ||| |||||||||||||||||| ||  |||||| | ||||| ||||||||||||    
T  11096 aaacacaattcaattcatagaaagggaaaagctattaccttgagagaaactttgcaaaattagcaaatttgaacaacgatg 11176  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 10093117 - 10093043
Alignment:
Q  206 aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaaca 280  Q
    ||||| |||||||||||||||||||| ||| |||||||||||||||||| ||  |||||| | ||||||||||||    
T  10093117 aaacacaattcaattcatagaaagggaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaaca 10093043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 287
Target Start/End: Original strand, 33044908 - 33044989
Alignment:
Q  206 aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatgg 287  Q
    ||||| ||||||||||||||||| || ||| |||||||||||||||||| ||  |||||| | |||||||||||| ||||||    
T  33044908 aaacacaattcaattcatagaaaaggaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaacagcgatgg 33044989  T

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Target: scaffold0035 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 207 - 287
Target Start/End: Complemental strand, 35719 - 35639
Alignment:
Q  207 aacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatgg 287  Q
    |||| |||||||||||||||||||| ||| |||||||||||||| ||| ||  |||||| | |||||||||||| ||||||    
T  35719 aacacaattcaattcatagaaagggaaaagctattaccttgagataaactttgcaaaattagcaaatctgaacagcgatgg 35639  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 37362214 - 37362273
Alignment:
Q  232 taaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaata 291  Q
    |||||| || |||||||||||||||||| ||||| ||||||| ||||||| |||||||||    
T  37362214 taaaacgataaccttgagagaaaattcataaaataaacaaatatgaacaatgatggaata 37362273  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 17682425 - 17682380
Alignment:
Q  206 aaacaaaattcaattcatagaaagggtaaaactattaccttgagag 251  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||||    
T  17682425 aaacacaattcaattcatagaaagggaaaaacgattaccttgagag 17682380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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