View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18411_low_18 (Length: 397)

Name: NF18411_low_18
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18411_low_18
NF18411_low_18
[»] chr1 (1 HSPs)
chr1 (1-392)||(38040669-38041062)
[»] scaffold0394 (1 HSPs)
scaffold0394 (101-193)||(3548-3638)
[»] chr5 (3 HSPs)
chr5 (104-175)||(34424538-34424607)
chr5 (105-193)||(43437244-43437331)
chr5 (108-159)||(22030964-22031015)
[»] chr6 (5 HSPs)
chr6 (108-193)||(3877979-3878065)
chr6 (108-193)||(19248442-19248528)
chr6 (113-193)||(20805989-20806069)
chr6 (108-193)||(13842974-13843060)
chr6 (105-193)||(26306722-26306809)
[»] chr2 (2 HSPs)
chr2 (108-164)||(10206660-10206716)
chr2 (108-193)||(37325187-37325274)
[»] chr7 (4 HSPs)
chr7 (107-164)||(32429524-32429581)
chr7 (108-193)||(6214629-6214715)
chr7 (108-190)||(40773883-40773964)
chr7 (108-193)||(9968872-9968956)
[»] chr4 (3 HSPs)
chr4 (117-193)||(12833686-12833763)
chr4 (126-193)||(3339065-3339131)
chr4 (108-193)||(48104230-48104316)
[»] chr3 (1 HSPs)
chr3 (108-193)||(18377552-18377638)
[»] chr8 (1 HSPs)
chr8 (108-193)||(12867702-12867786)


Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 38041062 - 38040669
Alignment:
Q  1 cataggcatctaaaataactccagagatagttaattgacattcgtgcaccttttaaatcggtttgatttaaccaatttaaaaaatattcaaacgaatatt 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  38041062 cataggcatctaaaataactccaaagatagttaattgacattcgtgcaccttttaaatcagtttgatttaaccaatttaaaaaatat-caaacgaatatt 38040964  T
Q  101 ttgattgtgtaaatacttttggttggtttgcctcttgcacatcttgtgcggggtgaatcgttgtggtttatatat----atatcattttagtttgttnnn 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    ||||||||||||||||||       
T  38040963 ttgattgtgtaaatacttttggttggtttgcctcttgcacatcttgtgcggggtgaattattgtggtttatatatatatatatcattttagtttgttaaa 38040864  T
Q  197 nnnnnnnnnntcgaacgacaattaactaatgttcaacaatgaaaggtaattaactatgattcggtcttttattacggcgcctaaagagcaattattaact 296  Q
              ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  38040863 aaaaaaatattcgaacgacaattaactaatgttcaacaatgaaagataattaactatga-tcggtcttttattacggcgcctaaagagcaattgttaact 38040765  T
Q  297 ttttctcaccccaaaattacttcaaaatctaaacacnnnnnnncagtttttgtagagttttatttgttcttttaaacaaaaatacaccgagtctct 392  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  38040764 ttttctcaccccaaaattacttcaaaatctaaacacaaaaaaacagtttttgtagagttctatttgttcttttaaacaaaaatacactgagtctct 38040669  T

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Target: scaffold0394 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 3548 - 3638
Alignment:
Q  101 ttgattgtgtaaatacttttggttggtttgcctcttgcacatcttgtgcggggtgaatcgttgtggtttatatatatatcattttagtttgtt 193  Q
    |||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| ||||||||  |||||||||||||||||||||||    
T  3548 ttgattgtgtaaatacttttggttggtttggctcttgcgcaccttgtgcggggtgaatcattgtggtt--tatatatatcattttagtttgtt 3638  T

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Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 104 - 175
Target Start/End: Original strand, 34424538 - 34424607
Alignment:
Q  104 attgtgtaaatacttttggttggtttgcctcttgcacatcttgtgcggggtgaatcgttgtggtttatatat 175  Q
    ||||||||||||||||||| |||||||||||||||||  |||||||||| |||||| |||||||||||||||    
T  34424538 attgtgtaaatacttttgggtggtttgcctcttgcac--cttgtgcgggatgaatcattgtggtttatatat 34424607  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 43437331 - 43437244
Alignment:
Q  105 ttgtgtaaatacttttggttggtttgcctcttgcacatcttgtgcggggtgaatcgttgtggtttatatatatatcattttagtttgtt 193  Q
    |||||||||||||||||| ||| || ||  ||||||| ||||||||||||||  | ||||  |||||| ||||||||||||||||||||    
T  43437331 ttgtgtaaatacttttgggtgggtttccctttgcacaccttgtgcggggtgatccattgttatttata-atatatcattttagtttgtt 43437244  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 22031015 - 22030964
Alignment:
Q  108 tgtaaatacttttggttggtttgcctcttgcacatcttgtgcggggtgaatc 159  Q
    |||||||||| || | |||||||||| |||||||||||||||||||| ||||    
T  22031015 tgtaaatactattcggtggtttgccttttgcacatcttgtgcggggtaaatc 22030964  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 3878065 - 3877979
Alignment:
Q  108 tgtaaatacttttggttggtttgcctcttgcacatcttgtgcggggtgaatcgttgtggtttatat-atatatcattttagtttgtt 193  Q
    ||||||||||||| | ||||||| || ||||||| ||| |||||||| |||| ||||||||| ||| |||| |||||||||||||||    
T  3878065 tgtaaatacttttcggtggtttgtcttttgcacaccttatgcggggtaaatcattgtggtttgtatcatatttcattttagtttgtt 3877979  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 19248528 - 19248442
Alignment:
Q  108 tgtaaatacttttggttggtttgcctcttgcacatcttgtgcggggtgaatcgttgtggtttata-tatatatcattttagtttgtt 193  Q
    ||||||||||||| | || |||||||||||||||||||||||||||  | || |  ||||||||| ||||| |||||||||||||||    
T  19248528 tgtaaatacttttcggtgttttgcctcttgcacatcttgtgcggggcaattcatcttggtttatattatatctcattttagtttgtt 19248442  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 193
Target Start/End: Original strand, 20805989 - 20806069
Alignment:
Q  113 atacttttggttggtttgcctcttgcacatcttgtgcggggtgaatcgttgtggtttata-tatatatcattttagtttgtt 193  Q
    |||||||||| ||||||||| |||||||||||||||| ||||||||| |||| ||| ||| ||||  |||||||||||||||    
T  20805989 atacttttgggtggtttgccccttgcacatcttgtgc-gggtgaatcattgttgttaatattatacctcattttagtttgtt 20806069  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 13843060 - 13842974
Alignment:
Q  108 tgtaaatacttttggttggtttgcctcttgcacatcttgtgcggggtgaatcgttgtggtttatat-atatatcattttagtttgtt 193  Q
    |||||||||| |||| ||||||||  ||| |||| ||||||||| ||||||| |||| ||| |||| |||| |||||||||||||||    
T  13843060 tgtaaatactcttgggtggtttgctccttacacaccttgtgcggagtgaatcattgttgttaatattatatctcattttagtttgtt 13842974  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 26306809 - 26306722
Alignment:
Q  105 ttgtgtaaatacttttggttggtttgcctcttgcacatcttgtgcggggtgaatcgttgtggtttatatatatatcattttagtttgtt 193  Q
    |||||||||||||||||| ||| || ||  ||||||| |||||||| |||||  | |||  ||||||| ||||||||||||||||||||    
T  26306809 ttgtgtaaatacttttgggtgggtttccctttgcacaccttgtgcgaggtgatccattgatgtttata-atatatcattttagtttgtt 26306722  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 10206716 - 10206660
Alignment:
Q  108 tgtaaatacttttggttggtttgcctcttgcacatcttgtgcggggtgaatcgttgt 164  Q
    |||||||||  |||| ||||||||| |||||||||||||||||||||||||| ||||    
T  10206716 tgtaaatacacttgggtggtttgccccttgcacatcttgtgcggggtgaatcattgt 10206660  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 37325274 - 37325187
Alignment:
Q  108 tgtaaatactttt-ggttggtttgcctcttgcacatcttgtgcggggtgaatcgttgtggtttatat-atatatcattttagtttgtt 193  Q
    ||||||||||||| || || || |||||||||||| |||||||||| ||||||  | |||||||||| |||| |||||||||||||||    
T  37325274 tgtaaatactttttggatgattggcctcttgcacaccttgtgcgggatgaatcactttggtttatataatatctcattttagtttgtt 37325187  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 32429581 - 32429524
Alignment:
Q  107 gtgtaaatacttttggttggtttgcctcttgcacatcttgtgcggggtgaatcgttgt 164  Q
    ||||||||||| |||| || |||||| |||||||| ||||||||||||||||| ||||    
T  32429581 gtgtaaatactcttgggtgatttgccccttgcacaccttgtgcggggtgaatcattgt 32429524  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 6214715 - 6214629
Alignment:
Q  108 tgtaaatacttttggttggtttgcctcttgcacatcttgtgcggggtgaatcgttgtggtttatat-atatatcattttagtttgtt 193  Q
    ||||||||||||| | || ||||||||||||||| ||||||| |||| | || |  |||||||||| |||| ||||||||| |||||    
T  6214715 tgtaaatacttttcggtgttttgcctcttgcacaccttgtgcagggtaattcatcttggtttatatcatatctcattttagcttgtt 6214629  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 190
Target Start/End: Complemental strand, 40773964 - 40773883
Alignment:
Q  108 tgtaaatacttttggttggtttgcctcttgcacatcttgtgcggggtgaatcgttgtggtttatatatatatcattttagttt 190  Q
    ||||||||||||||||||  |   || |||||||||||||||||| ||| || |||  ||||||| |||||||||||||||||    
T  40773964 tgtaaatacttttggttgtatcatcttttgcacatcttgtgcgggatgattcattgatgtttata-atatatcattttagttt 40773883  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 9968872 - 9968956
Alignment:
Q  108 tgtaaatacttttggttggtttgcctcttgcacatcttgtgcggggtgaatcgttgtggtttatatatatatcattttagtttgtt 193  Q
    ||||||||||||||| || ||  ||| ||||||| |||||||||||||  || |||| | ||| |||||||||||||||| |||||    
T  9968872 tgtaaatacttttggctgattcaccttttgcacaccttgtgcggggtgtttcattgttgatta-atatatatcattttagcttgtt 9968956  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 12833686 - 12833763
Alignment:
Q  117 ttttggttggtttgcctcttgcacatcttgtgcggggtgaatcgttgtggtttatat-atatatcattttagtttgtt 193  Q
    |||||| ||||| ||||||||||||  || |||||||||||||  | |||||||||| |||| |||||||||||||||    
T  12833686 ttttgggtggttggcctcttgcacactttatgcggggtgaatcactttggtttatataatatctcattttagtttgtt 12833763  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 193
Target Start/End: Complemental strand, 3339131 - 3339065
Alignment:
Q  126 gtttgcctcttgcacatcttgtgcggggtgaatcgttgtggtttatatatatatcattttagtttgtt 193  Q
    |||| ||||||||||||||||||||| | ||||| |||  |||||| ||||| |||||||||||||||    
T  3339131 gtttacctcttgcacatcttgtgcggagagaatctttggtgtttat-tatatctcattttagtttgtt 3339065  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 48104316 - 48104230
Alignment:
Q  108 tgtaaatacttttggttggtttgcctcttgcacatcttgtgcggggtgaatcgttgtggtttatat-atatatcattttagtttgtt 193  Q
    ||||||||||||| | || ||||||||||||||| ||| |||||||| | || |  |||||||||| |||| ||||||||| |||||    
T  48104316 tgtaaatacttttcggtgttttgcctcttgcacaccttatgcggggtaattcatcttggtttatatcatatctcattttagcttgtt 48104230  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 18377638 - 18377552
Alignment:
Q  108 tgtaaatacttttggttggtttgcctcttgcacatcttgtgcggggtgaatcgttgtggtttatat-atatatcattttagtttgtt 193  Q
    |||||||||| |||| || |||| || || |||||||||| || |  ||||| |||| |||||||| ||||||||||||||||||||    
T  18377638 tgtaaatactcttgggtgatttgtcttttccacatcttgtacgagacgaatcattgtcgtttatattatatatcattttagtttgtt 18377552  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 12867786 - 12867702
Alignment:
Q  108 tgtaaatacttttggttggtttgcctcttgcacatcttgtgcggggtgaatcgttgtggtttatatatatatcattttagtttgtt 193  Q
    |||||||||| ||| ||||||| ||  ||||||| |||||| ||||  |||| |||| ||||||| |||| |||||||||||||||    
T  12867786 tgtaaatactcttgattggttttccctttgcacaccttgtgtggggaaaatcattgttgtttata-atatctcattttagtttgtt 12867702  T

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